Variant report

Variant	rs9676368
Chromosome Location	chr19:44838725-44838726
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44830119..44832268-chr19:44837781..44840582,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1011567	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10775542	0.80[AMR][1000 genomes]
rs11670157	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11671074	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12151072	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12460431	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12972550	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12975315	0.81[AMR][1000 genomes]
rs12981298	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1434575	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1434576	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1897826	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2014501	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs2051058	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2125579	0.81[AMR][1000 genomes]
rs2196184	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2196186	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2196187	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2356727	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2356881	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4592768	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4802217	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4802218	0.81[AMR][1000 genomes]
rs4803697	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67711424	0.87[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7251134	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7252577	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7256402	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs733265	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7508523	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8104642	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8109706	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs984117	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44823200-44856200	ZNF genes & repeats	Liver	Liver
2	chr19:44824800-44841000	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:44825000-44846600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:44828000-44845000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
5	chr19:44828400-44846400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
6	chr19:44828600-44844200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr19:44828600-44845600	ZNF genes & repeats	Fetal Lung	lung
8	chr19:44828600-44848800	ZNF genes & repeats	Fetal Brain Female	brain
9	chr19:44828600-44851000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
10	chr19:44828800-44842600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
11	chr19:44828800-44846200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr19:44828800-44846400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr19:44829000-44844000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr19:44829200-44841200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
15	chr19:44830400-44845000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
16	chr19:44830600-44841200	ZNF genes & repeats	Brain Germinal Matrix	brain
17	chr19:44830600-44845200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr19:44830800-44840800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
19	chr19:44830800-44845600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr19:44830800-44850400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr19:44831400-44840000	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr19:44831600-44838800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr19:44831600-44841200	ZNF genes & repeats	Aorta	Aorta
24	chr19:44831600-44841400	Strong transcription	Placenta Amnion	Placenta Amnion
25	chr19:44831600-44846600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr19:44831800-44841200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr19:44831800-44845000	ZNF genes & repeats	Fetal Muscle Leg	muscle
28	chr19:44831800-44846400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr19:44832000-44845600	Weak transcription	Hela-S3	cervix
30	chr19:44832000-44848200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr19:44832400-44841200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
32	chr19:44832600-44839000	Strong transcription	HSMM	muscle
33	chr19:44833800-44838800	Weak transcription	NHEK	skin
34	chr19:44834000-44838800	Weak transcription	HSMMtube	muscle
35	chr19:44834400-44840600	ZNF genes & repeats	Brain Hippocampus Middle	brain
36	chr19:44834600-44838800	Weak transcription	NHLF	lung
37	chr19:44834800-44838800	Strong transcription	Skeletal Muscle Female	skeletal muscle
38	chr19:44834800-44841200	ZNF genes & repeats	A549	lung
39	chr19:44835000-44841200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
40	chr19:44835600-44838800	ZNF genes & repeats	Colon Smooth Muscle	Colon
41	chr19:44835800-44840400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr19:44835800-44841000	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
43	chr19:44836000-44839000	Weak transcription	HUVEC	blood vessel
44	chr19:44836000-44841200	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr19:44837000-44840600	ZNF genes & repeats	Brain Substantia Nigra	brain
46	chr19:44837000-44841000	ZNF genes & repeats	Fetal Heart	heart
47	chr19:44837200-44840600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr19:44837200-44840800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
49	chr19:44837200-44841000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
50	chr19:44837200-44841200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links