Variant report

Variant	rs12975315
Chromosome Location	chr19:44796765-44796766
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10405450	0.80[EUR][1000 genomes]
rs10410086	0.80[EUR][1000 genomes]
rs10423306	0.81[EUR][1000 genomes]
rs10425945	0.85[CEU][hapmap]
rs10775542	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1107064	0.82[JPT][hapmap]
rs11666199	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11667521	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11671074	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12459795	0.84[EUR][1000 genomes]
rs12460431	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12461251	0.87[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs12462557	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12462723	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12609635	0.82[CHB][hapmap];0.90[JPT][hapmap]
rs12972784	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12975546	1.00[CEU][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12980565	1.00[CEU][hapmap];0.80[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2014501	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2051058	0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2051059	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];0.83[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2125578	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2125579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2168989	0.85[CEU][hapmap]
rs2232801	0.85[CEU][hapmap]
rs2279072	0.89[CEU][hapmap];0.84[EUR][1000 genomes]
rs2279073	1.00[CEU][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4592768	0.82[AMR][1000 genomes]
rs4802210	0.86[JPT][hapmap]
rs4802217	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4802218	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4803694	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6509145	0.87[JPT][hapmap]
rs6509150	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7251682	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs7252577	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7253196	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7253533	0.85[CEU][hapmap]
rs7260304	0.88[CEU][hapmap]
rs7508523	0.83[AMR][1000 genomes]
rs8101032	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8102037	0.81[EUR][1000 genomes]
rs8103838	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs8105073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8105479	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs8106766	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8108934	0.81[EUR][1000 genomes]
rs8109462	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8109706	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9304640	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs9646642	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9646643	1.00[CEU][hapmap];0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9676368	0.81[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12975315	ZNF233	cis	multi-tissue	Pritchard

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44777000-44807000	ZNF genes & repeats	Liver	Liver
2	chr19:44781800-44801400	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:44783200-44804400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:44785200-44801600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:44788000-44799800	Weak transcription	HepG2	liver
6	chr19:44788200-44801600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
7	chr19:44790000-44801600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
8	chr19:44790400-44806800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr19:44790400-44808400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr19:44790600-44801200	Weak transcription	NHLF	lung
11	chr19:44790800-44797400	ZNF genes & repeats	Fetal Lung	lung
12	chr19:44790800-44798400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr19:44791000-44799600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr19:44791000-44800200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
15	chr19:44791200-44798800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
16	chr19:44791200-44801600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
17	chr19:44791200-44801600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
18	chr19:44791200-44802200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
19	chr19:44791200-44806800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
20	chr19:44791400-44799200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
21	chr19:44791400-44802200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
22	chr19:44791400-44802800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
23	chr19:44791400-44804600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr19:44792000-44797000	ZNF genes & repeats	Dnd41	blood
25	chr19:44792400-44807600	Weak transcription	HUVEC	blood vessel
26	chr19:44792800-44797200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr19:44792800-44801200	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr19:44792800-44807600	Weak transcription	NH-A	brain
29	chr19:44792800-44808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr19:44793000-44797200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr19:44793000-44801200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr19:44793200-44801200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr19:44793400-44799800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr19:44793600-44800200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr19:44793800-44801000	Weak transcription	Osteobl	bone
36	chr19:44794000-44799000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr19:44794200-44796800	Weak transcription	Fetal Heart	heart
38	chr19:44794200-44800200	Weak transcription	HUES48 Cell Line	embryonic stem cell
39	chr19:44794400-44799600	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr19:44794400-44799800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr19:44794400-44801200	Weak transcription	Stomach Mucosa	stomach
42	chr19:44794400-44806400	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr19:44794400-44806800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr19:44794600-44796800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr19:44794600-44801200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr19:44794600-44802800	Weak transcription	NHDF-Ad	bronchial
47	chr19:44794600-44807600	Strong transcription	Primary B cells from cord blood	blood
48	chr19:44794800-44799600	Weak transcription	Placenta	Placenta
49	chr19:44794800-44801200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr19:44794800-44801200	Weak transcription	Right Ventricle	heart

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