Variant report

Variant	rs10410086
Chromosome Location	chr19:44706949-44706950
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr19:44706640-44706972	MCF10A-Er-Src	breast:	n/a	n/a
2	STAT3	chr19:44706664-44706967	MCF10A-Er-Src	breast:	n/a	n/a
3	MAFK	chr19:44706694-44706990	HepG2	liver:	n/a	n/a
4	MAFK	chr19:44706726-44706993	IMR90	lung:	n/a	n/a
5	FOS	chr19:44706647-44706982	MCF10A-Er-Src	breast:	n/a	n/a
6	FOS	chr19:44706671-44706973	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44697928..44700459-chr19:44704236..44707102,2	K562	blood:

Variant related genes	Relation type
ZNF227	TF binding region

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10405450	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10423306	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10425945	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10775542	0.80[EUR][1000 genomes]
rs11666199	0.86[EUR][1000 genomes]
rs11667521	0.81[EUR][1000 genomes]
rs12459795	0.83[EUR][1000 genomes]
rs12460039	0.89[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12462557	0.81[EUR][1000 genomes]
rs12462723	0.81[EUR][1000 genomes]
rs12608984	0.86[ASN][1000 genomes]
rs12972784	0.87[EUR][1000 genomes]
rs12975315	0.80[EUR][1000 genomes]
rs12975546	0.82[EUR][1000 genomes]
rs12980565	0.82[EUR][1000 genomes]
rs2051059	0.88[EUR][1000 genomes]
rs2085516	0.84[ASN][1000 genomes]
rs2100643	0.84[ASN][1000 genomes]
rs2125578	0.82[EUR][1000 genomes]
rs2125579	0.80[EUR][1000 genomes]
rs2168989	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2232801	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2279072	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2279073	0.82[EUR][1000 genomes]
rs2293587	0.89[ASN][1000 genomes]
rs2356751	0.89[ASN][1000 genomes]
rs3817595	0.89[ASN][1000 genomes]
rs4802218	0.80[EUR][1000 genomes]
rs4803694	0.81[EUR][1000 genomes]
rs56357907	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs58778698	0.89[ASN][1000 genomes]
rs60668498	0.83[ASN][1000 genomes]
rs61412562	0.86[ASN][1000 genomes]
rs61589395	0.86[ASN][1000 genomes]
rs62117770	0.87[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6509146	0.86[ASN][1000 genomes]
rs6509150	0.81[EUR][1000 genomes]
rs7248114	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7249209	0.86[ASN][1000 genomes]
rs7251682	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7253196	0.90[EUR][1000 genomes]
rs7253533	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7259916	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7260304	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8101032	0.82[EUR][1000 genomes]
rs8102037	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8105073	0.81[EUR][1000 genomes]
rs8106766	0.81[EUR][1000 genomes]
rs8108934	0.82[EUR][1000 genomes]
rs9304640	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9646643	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833840	chr19:44520620-44715760	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44682200-44711200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr19:44698800-44711200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr19:44705200-44711200	Weak transcription	Right Atrium	heart
4	chr19:44706200-44707400	ZNF genes & repeats	Liver	Liver
5	chr19:44706400-44707200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr19:44706400-44707200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr19:44706600-44707000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr19:44706800-44707200	Enhancers	Hela-S3	cervix
9	chr19:44706800-44707200	Enhancers	NHLF	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links