Variant report

Variant	rs8105073
Chromosome Location	chr19:44795219-44795220
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10405450	0.81[EUR][1000 genomes]
rs10410086	0.81[EUR][1000 genomes]
rs10423306	0.82[EUR][1000 genomes]
rs10425945	0.88[CEU][hapmap]
rs10775542	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1107064	0.86[JPT][hapmap]
rs11666199	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11667521	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11671074	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12459795	0.83[EUR][1000 genomes]
rs12460431	0.81[ASN][1000 genomes]
rs12461251	0.86[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs12462557	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12462723	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12609635	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs12972784	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12975315	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12975546	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12980565	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2014501	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2051058	0.86[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2051059	1.00[CEU][hapmap];0.81[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2125578	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2125579	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2168989	0.87[CEU][hapmap]
rs2232801	0.87[CEU][hapmap]
rs2279072	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs2279073	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4802210	0.85[JPT][hapmap]
rs4802217	0.80[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4802218	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4803694	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6509145	0.86[JPT][hapmap]
rs6509150	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7251134	0.82[JPT][hapmap]
rs7251682	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs7252577	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7253196	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7253533	0.87[CEU][hapmap]
rs7259916	0.81[EUR][1000 genomes]
rs7260304	0.91[CEU][hapmap]
rs7508523	0.80[AMR][1000 genomes]
rs8101032	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8102037	0.82[EUR][1000 genomes]
rs8103838	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs8105479	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs8106766	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8108934	0.80[EUR][1000 genomes]
rs8109462	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8109706	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9304640	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs9646642	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9646643	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8105073	ZNF233	cis	multi-tissue	Pritchard

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44777000-44807000	ZNF genes & repeats	Liver	Liver
2	chr19:44781800-44801400	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:44783200-44804400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:44785200-44801600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:44788000-44799800	Weak transcription	HepG2	liver
6	chr19:44788200-44801600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
7	chr19:44788800-44795400	ZNF genes & repeats	Stomach Smooth Muscle	stomach
8	chr19:44790000-44801600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
9	chr19:44790400-44806800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr19:44790400-44808400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr19:44790600-44795400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
12	chr19:44790600-44801200	Weak transcription	NHLF	lung
13	chr19:44790800-44797400	ZNF genes & repeats	Fetal Lung	lung
14	chr19:44790800-44798400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr19:44791000-44795400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
16	chr19:44791000-44795400	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr19:44791000-44795400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr19:44791000-44799600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
19	chr19:44791000-44800200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
20	chr19:44791200-44795400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
21	chr19:44791200-44795400	ZNF genes & repeats	Colonic Mucosa	Colon
22	chr19:44791200-44795400	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
23	chr19:44791200-44798800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
24	chr19:44791200-44801600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
25	chr19:44791200-44801600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
26	chr19:44791200-44802200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
27	chr19:44791200-44806800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
28	chr19:44791400-44795400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
29	chr19:44791400-44795400	ZNF genes & repeats	Fetal Brain Female	brain
30	chr19:44791400-44795400	ZNF genes & repeats	Rectal Smooth Muscle	rectum
31	chr19:44791400-44799200	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
32	chr19:44791400-44802200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
33	chr19:44791400-44802800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
34	chr19:44791400-44804600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr19:44792000-44797000	ZNF genes & repeats	Dnd41	blood
36	chr19:44792400-44807600	Weak transcription	HUVEC	blood vessel
37	chr19:44792800-44795400	Strong transcription	Brain Substantia Nigra	brain
38	chr19:44792800-44795400	Strong transcription	Fetal Brain Male	brain
39	chr19:44792800-44795400	Strong transcription	Skeletal Muscle Male	skeletal muscle
40	chr19:44792800-44795400	Strong transcription	HSMM	muscle
41	chr19:44792800-44797200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr19:44792800-44801200	Weak transcription	H9 Cell Line	embryonic stem cell
43	chr19:44792800-44807600	Weak transcription	NH-A	brain
44	chr19:44792800-44808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr19:44793000-44796000	Strong transcription	Brain Hippocampus Middle	brain
46	chr19:44793000-44797200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr19:44793000-44801200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
48	chr19:44793200-44795400	Strong transcription	Fetal Muscle Trunk	muscle
49	chr19:44793200-44795600	Strong transcription	A549	lung
50	chr19:44793200-44801200	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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