Variant report

Variant	rs9304640
Chromosome Location	chr19:44721699-44721700
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44716236..44718543-chr19:44718913..44722241,5	K562	blood:
2	chr19:44716732..44718428-chr19:44721067..44723325,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131115	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10405450	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10410086	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10423306	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10425945	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10775542	0.81[EUR][1000 genomes]
rs11666199	0.87[EUR][1000 genomes]
rs11667521	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs12459795	0.83[EUR][1000 genomes]
rs12460039	0.91[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs12462557	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs12462723	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs12608984	0.80[CHB][hapmap];0.90[JPT][hapmap]
rs12972784	0.87[EUR][1000 genomes]
rs12975315	0.81[EUR][1000 genomes]
rs12975546	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs12980565	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs2051059	0.88[CEU][hapmap];0.90[EUR][1000 genomes]
rs2085516	0.90[JPT][hapmap]
rs2100643	0.90[JPT][hapmap]
rs2125578	0.82[EUR][1000 genomes]
rs2125579	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs2168989	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2232801	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2279072	1.00[CEU][hapmap];0.92[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2279073	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs2293587	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs2356751	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs3817595	0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs4802218	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs4803694	0.82[EUR][1000 genomes]
rs56357907	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs58778698	0.83[ASN][1000 genomes]
rs62117770	0.89[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6509146	0.90[JPT][hapmap]
rs6509150	0.82[EUR][1000 genomes]
rs7248114	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7249209	0.90[JPT][hapmap]
rs7251682	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7253196	0.88[EUR][1000 genomes]
rs7253533	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7259916	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7260304	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8101032	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs8102037	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8105073	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs8106766	0.82[EUR][1000 genomes]
rs8108934	0.80[EUR][1000 genomes]
rs8109462	0.80[EUR][1000 genomes]
rs9646643	0.89[CEU][hapmap];0.82[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44717400-44739000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:44717600-44725000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr19:44717600-44725200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:44717600-44730200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr19:44717600-44739600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr19:44717800-44722000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr19:44717800-44731600	Weak transcription	HSMMtube	muscle
8	chr19:44717800-44732200	Weak transcription	Stomach Mucosa	stomach
9	chr19:44718000-44723600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr19:44718000-44725000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr19:44718200-44723000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr19:44718200-44723800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr19:44718200-44732400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr19:44718200-44732400	Weak transcription	K562	blood
15	chr19:44718200-44732600	Weak transcription	HepG2	liver
16	chr19:44718200-44732800	Weak transcription	HMEC	breast
17	chr19:44718200-44738800	Weak transcription	Hela-S3	cervix
18	chr19:44718400-44732400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr19:44718400-44736400	Weak transcription	HUVEC	blood vessel
20	chr19:44718600-44724800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr19:44718800-44723200	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr19:44718800-44723400	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr19:44718800-44723400	Strong transcription	Fetal Muscle Leg	muscle
24	chr19:44718800-44723600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr19:44718800-44723600	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr19:44718800-44723600	Strong transcription	Rectal Mucosa Donor 31	rectum
27	chr19:44718800-44723800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
28	chr19:44718800-44724000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr19:44718800-44724000	ZNF genes & repeats	Liver	Liver
30	chr19:44718800-44724000	Strong transcription	Fetal Intestine Large	intestine
31	chr19:44718800-44725000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr19:44718800-44725000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr19:44718800-44725600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr19:44719000-44723600	Strong transcription	Primary B cells from peripheral blood	blood
35	chr19:44719000-44723800	Strong transcription	Primary T helper cells fromperipheralblood	blood
36	chr19:44719000-44725000	Strong transcription	Primary T helper cells PMA-I stimulated	--
37	chr19:44719200-44723600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr19:44719200-44723800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr19:44719400-44722800	Weak transcription	Right Ventricle	heart
40	chr19:44719600-44723600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr19:44719600-44725200	Strong transcription	Dnd41	blood
42	chr19:44719800-44723800	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr19:44720000-44723400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr19:44720400-44723400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr19:44720400-44723600	Strong transcription	Brain Angular Gyrus	brain
46	chr19:44720400-44723800	ZNF genes & repeats	GM12878-XiMat	blood
47	chr19:44720600-44721800	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr19:44720600-44723200	Strong transcription	Muscle Satellite Cultured Cells	--
49	chr19:44720600-44723200	ZNF genes & repeats	Fetal Kidney	kidney
50	chr19:44720600-44723600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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