Variant report

Variant	rs7259916
Chromosome Location	chr19:44730356-44730357
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr19:44730240-44730390	HEK293	kidney:	n/a	n/a

Variant related genes	Relation type
ZNF227	TF binding region

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10405450	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10410086	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10423306	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10425945	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11667521	0.81[EUR][1000 genomes]
rs12460039	0.87[AFR][1000 genomes]
rs12462557	0.81[EUR][1000 genomes]
rs12462723	0.81[EUR][1000 genomes]
rs12975546	0.86[EUR][1000 genomes]
rs12980565	0.86[EUR][1000 genomes]
rs2051059	0.82[EUR][1000 genomes]
rs2125578	0.86[EUR][1000 genomes]
rs2168989	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2232801	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2279072	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2279073	0.86[EUR][1000 genomes]
rs4803694	0.81[EUR][1000 genomes]
rs56357907	0.85[AFR][1000 genomes]
rs62117770	0.85[AFR][1000 genomes]
rs6509150	0.81[EUR][1000 genomes]
rs7248114	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7251682	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7253533	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7260304	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8101032	0.86[EUR][1000 genomes]
rs8102037	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8105073	0.81[EUR][1000 genomes]
rs8106766	0.81[EUR][1000 genomes]
rs9304640	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9646642	0.82[EUR][1000 genomes]
rs9646643	0.86[EUR][1000 genomes]

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44717400-44739000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:44717600-44739600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr19:44717800-44731600	Weak transcription	HSMMtube	muscle
4	chr19:44717800-44732200	Weak transcription	Stomach Mucosa	stomach
5	chr19:44718200-44732400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr19:44718200-44732400	Weak transcription	K562	blood
7	chr19:44718200-44732600	Weak transcription	HepG2	liver
8	chr19:44718200-44732800	Weak transcription	HMEC	breast
9	chr19:44718200-44738800	Weak transcription	Hela-S3	cervix
10	chr19:44718400-44732400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr19:44718400-44736400	Weak transcription	HUVEC	blood vessel
12	chr19:44722000-44730800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr19:44722000-44732000	Weak transcription	Colonic Mucosa	Colon
14	chr19:44722000-44732400	Weak transcription	Fetal Heart	heart
15	chr19:44722200-44731000	Weak transcription	NHDF-Ad	bronchial
16	chr19:44722400-44731800	Weak transcription	Primary B cells from cord blood	blood
17	chr19:44722800-44732000	Weak transcription	Brain Cingulate Gyrus	brain
18	chr19:44723200-44731200	Weak transcription	Fetal Kidney	kidney
19	chr19:44723200-44732400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr19:44723400-44731600	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr19:44723400-44731800	Weak transcription	Left Ventricle	heart
22	chr19:44723400-44731800	Weak transcription	Right Ventricle	heart
23	chr19:44723600-44731000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr19:44723600-44731000	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr19:44723600-44731000	Weak transcription	A549	lung
26	chr19:44723600-44731200	Weak transcription	Primary T cells from cord blood	blood
27	chr19:44723600-44731400	Weak transcription	Primary B cells from peripheral blood	blood
28	chr19:44723600-44731600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
29	chr19:44723600-44731800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr19:44723600-44731800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr19:44723600-44731800	Weak transcription	Brain Anterior Caudate	brain
32	chr19:44723600-44731800	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr19:44723600-44731800	Weak transcription	Fetal Brain Male	brain
34	chr19:44723600-44731800	Weak transcription	Fetal Thymus	thymus
35	chr19:44723600-44732000	Weak transcription	Brain Hippocampus Middle	brain
36	chr19:44723600-44732400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr19:44723600-44732600	Weak transcription	Brain Angular Gyrus	brain
38	chr19:44723600-44732600	Weak transcription	NHLF	lung
39	chr19:44723600-44738000	Weak transcription	NHEK	skin
40	chr19:44723800-44730400	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr19:44723800-44731000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr19:44723800-44731000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr19:44723800-44731200	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr19:44723800-44731800	Weak transcription	Placenta	Placenta
45	chr19:44723800-44732400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr19:44723800-44732400	Weak transcription	HSMM	muscle
47	chr19:44723800-44732600	Weak transcription	Osteobl	bone
48	chr19:44723800-44735800	Weak transcription	NH-A	brain
49	chr19:44724800-44730400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr19:44725000-44730400	Weak transcription	Primary T helper cells PMA-I stimulated	--

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