Variant report

Variant	rs12980565
Chromosome Location	chr19:44742278-44742279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44732822..44734810-chr19:44741387..44743469,2	K562	blood:
2	chr19:44739640..44742432-chr19:44813683..44816580,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10405450	0.82[EUR][1000 genomes]
rs10410086	0.82[EUR][1000 genomes]
rs10423306	0.82[EUR][1000 genomes]
rs10425945	0.86[CEU][hapmap]
rs10775542	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11666199	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11667521	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11671074	0.82[AMR][1000 genomes]
rs12459795	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12460431	0.86[AMR][1000 genomes]
rs12461251	0.81[AMR][1000 genomes]
rs12462557	1.00[CEU][hapmap];0.89[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12462723	1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12972784	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12975315	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12975546	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2014501	0.82[EUR][1000 genomes]
rs2051058	0.88[AMR][1000 genomes]
rs2051059	1.00[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2125578	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2125579	1.00[CEU][hapmap];0.80[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2168989	0.85[CEU][hapmap]
rs2232801	0.85[CEU][hapmap]
rs2279072	0.89[CEU][hapmap];0.90[EUR][1000 genomes]
rs2279073	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2356727	0.84[AMR][1000 genomes]
rs4592768	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4802217	0.84[AMR][1000 genomes]
rs4802218	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4803694	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6509150	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7251682	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs7252577	0.82[EUR][1000 genomes]
rs7253196	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7253533	0.85[CEU][hapmap]
rs7259916	0.86[EUR][1000 genomes]
rs7260304	0.89[CEU][hapmap]
rs7508523	0.88[AMR][1000 genomes]
rs8101032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8102037	0.87[EUR][1000 genomes]
rs8105073	1.00[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8105479	0.92[AFR][1000 genomes]
rs8106766	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8108934	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8109462	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8109706	0.86[AMR][1000 genomes]
rs9304640	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs9646642	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9646643	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44743600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr19:44730000-44745000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
5	chr19:44730200-44743000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
6	chr19:44730200-44743400	ZNF genes & repeats	Fetal Lung	lung
7	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
8	chr19:44730400-44743400	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr19:44731000-44744400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
10	chr19:44731800-44744200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
11	chr19:44733800-44744200	ZNF genes & repeats	A549	lung
12	chr19:44737600-44744400	ZNF genes & repeats	Fetal Brain Female	brain
13	chr19:44738000-44742600	ZNF genes & repeats	Brain Hippocampus Middle	brain
14	chr19:44738000-44742600	ZNF genes & repeats	Psoas Muscle	Psoas
15	chr19:44740000-44746400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr19:44740200-44750800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr19:44740200-44752200	Weak transcription	Hela-S3	cervix
18	chr19:44741000-44742400	Weak transcription	Pancreas	Pancrea
19	chr19:44741000-44742600	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr19:44741000-44742600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr19:44741000-44742600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr19:44741000-44743200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr19:44741000-44743400	Weak transcription	Thymus	Thymus
24	chr19:44741000-44744000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr19:44741000-44745000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr19:44741000-44745600	Weak transcription	Brain Angular Gyrus	brain
27	chr19:44741000-44752600	Weak transcription	NHDF-Ad	bronchial
28	chr19:44741000-44753000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr19:44741200-44742400	Weak transcription	Fetal Thymus	thymus
30	chr19:44741200-44742600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr19:44741200-44742800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr19:44741200-44742800	Weak transcription	HepG2	liver
33	chr19:44741200-44742800	Weak transcription	NHEK	skin
34	chr19:44741200-44743000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr19:44741200-44743000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr19:44741200-44743000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr19:44741200-44743400	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr19:44741200-44744000	Weak transcription	Rectal Smooth Muscle	rectum
39	chr19:44741200-44744000	Weak transcription	Dnd41	blood
40	chr19:44741200-44744200	Weak transcription	Placenta	Placenta
41	chr19:44741200-44745000	Weak transcription	HSMMtube	muscle
42	chr19:44741200-44745600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr19:44741200-44748000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr19:44741200-44748000	Weak transcription	Fetal Brain Male	brain
45	chr19:44741400-44743000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr19:44741400-44743200	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr19:44741400-44743200	Weak transcription	Skeletal Muscle Male	skeletal muscle
48	chr19:44741400-44743800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr19:44741400-44743800	Weak transcription	Brain Germinal Matrix	brain
50	chr19:44741400-44745800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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