Variant report

Variant	rs10775542
Chromosome Location	chr19:44779646-44779647
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44764212..44765954-chr19:44776988..44779803,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10405450	0.80[EUR][1000 genomes]
rs10410086	0.80[EUR][1000 genomes]
rs10423306	0.81[EUR][1000 genomes]
rs11666199	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11667521	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11671074	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12459795	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12460431	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12461251	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12462557	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12462723	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12972784	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12975315	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12975546	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12980565	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2014501	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2051058	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2051059	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2125578	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2125579	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2279072	0.84[EUR][1000 genomes]
rs2279073	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2356727	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4592768	0.87[AMR][1000 genomes]
rs4802217	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4802218	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4803694	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6509150	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7251682	0.81[EUR][1000 genomes]
rs7252577	0.88[EUR][1000 genomes]
rs7253196	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7508523	0.88[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8101032	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8102037	0.81[EUR][1000 genomes]
rs8105073	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8105479	0.85[AFR][1000 genomes]
rs8106766	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8108934	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8109462	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8109706	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9304640	0.81[EUR][1000 genomes]
rs9646642	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9646643	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9676368	0.80[AMR][1000 genomes]

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44764800-44782000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr19:44770000-44780800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr19:44775000-44791200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr19:44776800-44784000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:44777000-44781000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr19:44777000-44807000	ZNF genes & repeats	Liver	Liver
7	chr19:44777200-44780800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr19:44777400-44779800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
9	chr19:44777400-44780600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
10	chr19:44777400-44782400	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
11	chr19:44777600-44780000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr19:44778000-44780800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr19:44778400-44780000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr19:44778600-44780200	Weak transcription	Fetal Stomach	stomach
15	chr19:44778600-44787000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr19:44778800-44780000	Weak transcription	Fetal Brain Male	brain
17	chr19:44778800-44780000	Weak transcription	Fetal Intestine Large	intestine
18	chr19:44778800-44780000	Weak transcription	Ovary	ovary
19	chr19:44778800-44780200	Weak transcription	Lung	lung
20	chr19:44778800-44780400	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr19:44778800-44780400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr19:44778800-44780600	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr19:44778800-44780800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr19:44778800-44781600	Weak transcription	Left Ventricle	heart
25	chr19:44778800-44783200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr19:44778800-44784800	Weak transcription	Right Ventricle	heart
27	chr19:44778800-44791000	Weak transcription	Fetal Heart	heart
28	chr19:44778800-44791000	Weak transcription	HSMMtube	muscle
29	chr19:44778800-44791400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr19:44779000-44783200	Weak transcription	Fetal Lung	lung
31	chr19:44779200-44781400	Weak transcription	Placenta	Placenta
32	chr19:44779200-44783400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr19:44779200-44789200	Weak transcription	Brain Angular Gyrus	brain
34	chr19:44779400-44791000	Weak transcription	Dnd41	blood
35	chr19:44779600-44780000	ZNF genes & repeats	Psoas Muscle	Psoas

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