Variant report

Variant	rs2014501
Chromosome Location	chr19:44817316-44817317
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44816445..44819048-chr19:45004238..45006383,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000167384	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs1011567	0.86[ASN][1000 genomes]
rs10775542	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11667521	0.87[EUR][1000 genomes]
rs11670157	0.94[ASN][1000 genomes]
rs12151072	0.87[ASN][1000 genomes]
rs12462557	0.87[EUR][1000 genomes]
rs12462723	0.87[EUR][1000 genomes]
rs12972550	0.89[ASN][1000 genomes]
rs12975315	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12975546	0.82[EUR][1000 genomes]
rs12980565	0.82[EUR][1000 genomes]
rs12981298	0.94[ASN][1000 genomes]
rs1434575	0.87[ASN][1000 genomes]
rs1434576	0.87[ASN][1000 genomes]
rs1897826	0.86[ASN][1000 genomes]
rs2125578	0.82[EUR][1000 genomes]
rs2125579	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2196184	0.86[ASN][1000 genomes]
rs2196186	0.86[ASN][1000 genomes]
rs2196187	0.86[ASN][1000 genomes]
rs2279073	0.82[EUR][1000 genomes]
rs2356881	0.86[ASN][1000 genomes]
rs4802218	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4803694	0.87[EUR][1000 genomes]
rs4803697	0.87[ASN][1000 genomes]
rs6509150	0.87[EUR][1000 genomes]
rs67711424	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7251134	0.86[ASN][1000 genomes]
rs7252577	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7256402	0.92[ASN][1000 genomes]
rs733265	0.98[ASN][1000 genomes]
rs8101032	0.82[EUR][1000 genomes]
rs8104642	0.86[ASN][1000 genomes]
rs8105073	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8106766	0.87[EUR][1000 genomes]
rs8109462	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9646643	0.82[EUR][1000 genomes]
rs9676368	0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs984117	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3318935	chr19:44813543-44819319	Enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3318936	chr19:44813543-44819319	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv3330033	chr19:44813552-44819322	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44814600-44824600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr19:44817000-44818400	Enhancers	Primary B cells from peripheral blood	blood

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