Variant report

Variant	rs4802218
Chromosome Location	chr19:44800268-44800269
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10405450	0.80[EUR][1000 genomes]
rs10410086	0.80[EUR][1000 genomes]
rs10423306	0.81[EUR][1000 genomes]
rs10425945	0.85[CEU][hapmap]
rs10775542	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1107064	0.85[JPT][hapmap]
rs11666199	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11667521	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11671074	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12459795	0.84[EUR][1000 genomes]
rs12460431	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12461251	0.86[CHB][hapmap];0.90[JPT][hapmap];0.80[ASN][1000 genomes]
rs12462557	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12462723	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12609635	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs12972784	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12975315	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12975546	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12980565	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2014501	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2051058	0.85[CHB][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2051059	0.95[CEU][hapmap];0.81[CHB][hapmap];0.88[JPT][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2125578	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2125579	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2168989	0.84[CEU][hapmap]
rs2232801	0.84[CEU][hapmap]
rs2279072	0.88[CEU][hapmap];0.84[EUR][1000 genomes]
rs2279073	0.96[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4592768	0.82[AMR][1000 genomes]
rs4802210	0.90[JPT][hapmap]
rs4802217	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs4803694	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6509145	0.90[JPT][hapmap]
rs6509150	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7251682	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs7252577	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7253196	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7253533	0.84[CEU][hapmap]
rs7260304	0.88[CEU][hapmap]
rs7508523	0.83[AMR][1000 genomes]
rs8101032	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8102037	0.81[EUR][1000 genomes]
rs8103838	0.86[CHB][hapmap];0.90[JPT][hapmap]
rs8105073	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8105479	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs8106766	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8108934	0.81[EUR][1000 genomes]
rs8109462	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8109706	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9304640	0.88[CEU][hapmap];0.81[EUR][1000 genomes]
rs9646642	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9646643	0.96[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9676368	0.81[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4802218	ZNF233	cis	multi-tissue	Pritchard

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44777000-44807000	ZNF genes & repeats	Liver	Liver
2	chr19:44781800-44801400	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:44783200-44804400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:44785200-44801600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:44788200-44801600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
6	chr19:44790000-44801600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
7	chr19:44790400-44806800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr19:44790400-44808400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr19:44790600-44801200	Weak transcription	NHLF	lung
10	chr19:44791200-44801600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
11	chr19:44791200-44801600	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
12	chr19:44791200-44802200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
13	chr19:44791200-44806800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
14	chr19:44791400-44802200	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
15	chr19:44791400-44802800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
16	chr19:44791400-44804600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr19:44792400-44807600	Weak transcription	HUVEC	blood vessel
18	chr19:44792800-44801200	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr19:44792800-44807600	Weak transcription	NH-A	brain
20	chr19:44792800-44808400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr19:44793000-44801200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr19:44793200-44801200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr19:44793800-44801000	Weak transcription	Osteobl	bone
24	chr19:44794400-44801200	Weak transcription	Stomach Mucosa	stomach
25	chr19:44794400-44806400	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr19:44794400-44806800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr19:44794600-44801200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr19:44794600-44802800	Weak transcription	NHDF-Ad	bronchial
29	chr19:44794600-44807600	Strong transcription	Primary B cells from cord blood	blood
30	chr19:44794800-44801200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr19:44794800-44801200	Weak transcription	Right Ventricle	heart
32	chr19:44794800-44801200	Weak transcription	HSMMtube	muscle
33	chr19:44794800-44803600	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr19:44795000-44801200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr19:44795000-44801200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr19:44795000-44801200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr19:44795000-44801200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr19:44795000-44801200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr19:44795000-44801200	Weak transcription	Aorta	Aorta
40	chr19:44795000-44801200	Weak transcription	Esophagus	oesophagus
41	chr19:44795000-44801200	Weak transcription	Fetal Intestine Small	intestine
42	chr19:44795000-44801200	Weak transcription	Fetal Stomach	stomach
43	chr19:44795000-44801200	Weak transcription	Fetal Thymus	thymus
44	chr19:44795000-44801200	Weak transcription	Gastric	stomach
45	chr19:44795000-44801200	Weak transcription	Lung	lung
46	chr19:44795000-44801200	Weak transcription	Pancreas	Pancrea
47	chr19:44795000-44801200	Weak transcription	Thymus	Thymus
48	chr19:44795000-44801200	Weak transcription	Spleen	Spleen
49	chr19:44795000-44802400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr19:44795400-44801200	Weak transcription	HMEC	breast

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