Variant report

Variant	rs9646642
Chromosome Location	chr19:44743550-44743551
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44738727..44740500-chr19:44743424..44745617,2	K562	blood:
2	chr19:44737360..44739314-chr19:44742429..44745029,2	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10775542	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11666199	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11667521	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11671074	0.82[AMR][1000 genomes]
rs12459795	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12460431	0.86[AMR][1000 genomes]
rs12461251	0.81[AMR][1000 genomes]
rs12462557	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12462723	0.81[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12972784	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12975315	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12975546	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12980565	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2051058	0.88[AMR][1000 genomes]
rs2051059	0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2125578	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2125579	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2279072	0.86[EUR][1000 genomes]
rs2279073	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2356727	0.84[AMR][1000 genomes]
rs4592768	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4802217	0.84[AMR][1000 genomes]
rs4802218	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4803694	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6509150	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7253196	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7259916	0.82[EUR][1000 genomes]
rs7508523	0.88[AMR][1000 genomes]
rs8101032	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8102037	0.83[EUR][1000 genomes]
rs8105073	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8105479	0.82[AFR][1000 genomes]
rs8106766	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8108934	0.84[AMR][1000 genomes]
rs8109462	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8109706	0.86[AMR][1000 genomes]
rs9646643	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44743600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr19:44730000-44745000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
5	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr19:44731000-44744400	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
7	chr19:44731800-44744200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
8	chr19:44733800-44744200	ZNF genes & repeats	A549	lung
9	chr19:44737600-44744400	ZNF genes & repeats	Fetal Brain Female	brain
10	chr19:44740000-44746400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr19:44740200-44750800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr19:44740200-44752200	Weak transcription	Hela-S3	cervix
13	chr19:44741000-44744000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr19:44741000-44745000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr19:44741000-44745600	Weak transcription	Brain Angular Gyrus	brain
16	chr19:44741000-44752600	Weak transcription	NHDF-Ad	bronchial
17	chr19:44741000-44753000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr19:44741200-44744000	Weak transcription	Rectal Smooth Muscle	rectum
19	chr19:44741200-44744000	Weak transcription	Dnd41	blood
20	chr19:44741200-44744200	Weak transcription	Placenta	Placenta
21	chr19:44741200-44745000	Weak transcription	HSMMtube	muscle
22	chr19:44741200-44745600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr19:44741200-44748000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr19:44741200-44748000	Weak transcription	Fetal Brain Male	brain
25	chr19:44741400-44743800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr19:44741400-44743800	Weak transcription	Brain Germinal Matrix	brain
27	chr19:44741400-44745800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr19:44741400-44751800	Weak transcription	HSMM	muscle
29	chr19:44741800-44744200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr19:44741800-44744800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr19:44741800-44748600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr19:44742000-44746600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr19:44742000-44763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr19:44742200-44746600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
35	chr19:44742400-44744000	ZNF genes & repeats	Fetal Muscle Leg	muscle
36	chr19:44742400-44744400	ZNF genes & repeats	Aorta	Aorta
37	chr19:44742400-44744400	ZNF genes & repeats	Ovary	ovary
38	chr19:44742400-44745400	Weak transcription	HUES64 Cell Line	embryonic stem cell
39	chr19:44742600-44744000	Weak transcription	Left Ventricle	heart
40	chr19:44742600-44745400	Weak transcription	Brain Hippocampus Middle	brain
41	chr19:44743000-44743600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr19:44743000-44744400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
43	chr19:44743200-44744000	ZNF genes & repeats	Skeletal Muscle Male	skeletal muscle
44	chr19:44743200-44744400	ZNF genes & repeats	Primary B cells from cord blood	blood
45	chr19:44743200-44745800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr19:44743400-44743800	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
47	chr19:44743400-44744400	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
48	chr19:44743400-44744400	ZNF genes & repeats	Duodenum Mucosa	Duodenum
49	chr19:44743400-44745400	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr19:44743400-44750800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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