Variant report

Variant	rs4592768
Chromosome Location	chr19:44746991-44746992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44745585..44747611-chr19:44762320..44764226,2	K562	blood:

Variant related genes	Relation type
ENSG00000159915	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10775542	0.87[AMR][1000 genomes]
rs11666199	0.81[AMR][1000 genomes]
rs11667521	0.88[AMR][1000 genomes]
rs11670157	0.85[EUR][1000 genomes]
rs11671074	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12460431	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12461251	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12462557	0.86[AMR][1000 genomes]
rs12462723	0.88[AMR][1000 genomes]
rs12609635	0.85[AFR][1000 genomes]
rs12972550	0.82[AMR][1000 genomes]
rs12972784	0.85[AMR][1000 genomes]
rs12975315	0.82[AMR][1000 genomes]
rs12975546	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12980565	0.91[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12981298	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2051058	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2051059	0.89[AMR][1000 genomes]
rs2125578	0.91[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2125579	0.82[AMR][1000 genomes]
rs2279073	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2356727	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4802217	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4802218	0.82[AMR][1000 genomes]
rs4803694	0.86[AMR][1000 genomes]
rs62117771	0.85[AFR][1000 genomes]
rs6509150	0.86[AMR][1000 genomes]
rs67711424	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7253196	0.83[AMR][1000 genomes]
rs7256402	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs733265	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7508523	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8101032	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs8106766	0.84[AMR][1000 genomes]
rs8109462	0.85[AMR][1000 genomes]
rs8109706	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9646642	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9646643	0.91[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9676368	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs984117	0.84[EUR][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
3	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:44740200-44750800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr19:44740200-44752200	Weak transcription	Hela-S3	cervix
6	chr19:44741000-44752600	Weak transcription	NHDF-Ad	bronchial
7	chr19:44741000-44753000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr19:44741200-44748000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr19:44741200-44748000	Weak transcription	Fetal Brain Male	brain
10	chr19:44741400-44751800	Weak transcription	HSMM	muscle
11	chr19:44741800-44748600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr19:44742000-44763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr19:44743400-44750800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr19:44743600-44747400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr19:44744200-44747600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr19:44744600-44747400	Weak transcription	Left Ventricle	heart
17	chr19:44745000-44747200	Weak transcription	Brain Germinal Matrix	brain
18	chr19:44746200-44756000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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