Variant report

Variant	rs12460431
Chromosome Location	chr6:27621214-27621215
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:27620343..27622323-chr6:27775251..27777000,2	K562	blood:
2	chr6:27619629..27622323-chr6:27775500..27777172,2	K562	blood:

Variant related genes	Relation type
ENSG00000185130	Chromatin interaction
ENSG00000196747	Chromatin interaction

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10409155	0.83[ASN][1000 genomes]
rs10417451	0.82[ASN][1000 genomes]
rs10775542	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs11666199	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11667521	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs11670157	0.80[EUR][1000 genomes]
rs11671074	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12459795	0.94[ASN][1000 genomes]
rs12461251	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12462557	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12462723	0.87[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12609635	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12972550	0.81[AMR][1000 genomes]
rs12972784	0.86[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs12975315	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12975546	0.86[AMR][1000 genomes]
rs12980565	0.86[AMR][1000 genomes]
rs12981298	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2051058	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2051059	0.88[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2125578	0.86[AMR][1000 genomes]
rs2125579	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs2279073	0.82[AMR][1000 genomes]
rs2356727	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2356752	0.87[ASN][1000 genomes]
rs4592768	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4802209	0.82[ASN][1000 genomes]
rs4802210	0.83[ASN][1000 genomes]
rs4802217	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4802218	0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4803684	0.81[ASN][1000 genomes]
rs4803694	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62117771	0.83[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6509145	0.83[ASN][1000 genomes]
rs6509150	0.85[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs67711424	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7248054	0.91[ASN][1000 genomes]
rs7253196	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7256402	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs733265	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7508523	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8101032	0.86[AMR][1000 genomes]
rs8103838	0.86[ASN][1000 genomes]
rs8105073	0.81[ASN][1000 genomes]
rs8105479	0.93[ASN][1000 genomes]
rs8106766	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs8108934	0.92[ASN][1000 genomes]
rs8109462	0.84[AMR][1000 genomes]
rs8109706	0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9646642	0.86[AMR][1000 genomes]
rs9646643	0.86[AMR][1000 genomes]
rs9676368	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
2	nsv883510	chr6:27550712-27730064	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
3	nsv1023673	chr6:27570731-27688782	Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv830618	chr6:27593274-27789605	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv1031337	chr6:27596676-27734884	Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27619600-27621600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:27621000-27622600	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links