Variant report

Variant	rs11667521
Chromosome Location	chr19:44753776-44753777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10405450	0.81[EUR][1000 genomes]
rs10410086	0.81[EUR][1000 genomes]
rs10423306	0.82[EUR][1000 genomes]
rs10425945	0.85[CEU][hapmap]
rs10775542	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1107064	0.82[JPT][hapmap]
rs11666199	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11671074	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12459795	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12460431	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12461251	0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12462557	0.93[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12462723	0.81[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12609635	0.91[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12972784	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12975315	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12975546	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12980565	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2014501	0.87[EUR][1000 genomes]
rs2051058	0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[JPT][hapmap];0.88[MEX][hapmap];0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2051059	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2085516	0.83[GIH][hapmap]
rs2125578	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2125579	1.00[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.90[GIH][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2168989	0.85[CEU][hapmap];0.95[GIH][hapmap];0.86[TSI][hapmap]
rs2232801	0.85[CEU][hapmap];0.93[GIH][hapmap];0.86[TSI][hapmap]
rs2279072	0.89[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.85[EUR][1000 genomes]
rs2279073	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.96[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2293587	0.83[GIH][hapmap]
rs2356727	0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs2356751	0.81[GIH][hapmap]
rs3817595	0.83[GIH][hapmap]
rs4592768	0.88[AMR][1000 genomes]
rs4802210	0.83[GIH][hapmap];0.95[JPT][hapmap]
rs4802217	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4802218	0.96[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4803694	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62117771	0.83[ASN][1000 genomes]
rs6509145	0.95[JPT][hapmap]
rs6509146	0.83[GIH][hapmap]
rs6509150	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7248054	0.81[ASN][1000 genomes]
rs7249209	0.81[GIH][hapmap]
rs7251134	0.83[MEX][hapmap]
rs7251682	0.89[CEU][hapmap];1.00[GIH][hapmap];0.91[TSI][hapmap];0.82[EUR][1000 genomes]
rs7252577	0.87[EUR][1000 genomes]
rs7253196	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7253533	0.85[CEU][hapmap]
rs7259916	0.81[EUR][1000 genomes]
rs7260304	0.89[CEU][hapmap];0.95[GIH][hapmap];0.86[TSI][hapmap]
rs7508523	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs8101032	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8102037	0.82[EUR][1000 genomes]
rs8103838	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs8105073	1.00[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8105479	0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs8106766	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8108934	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8109462	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8109706	0.87[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs9304640	0.89[CEU][hapmap];0.82[EUR][1000 genomes]
rs9646642	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9646643	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.92[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs11667521	ZNF233	cis	multi-tissue	Pritchard
rs11667521	SYT3	cis	cerebellum	SCAN
rs11667521	KLK9	cis	parietal	SCAN
rs11667521	ZNF528	cis	parietal	SCAN
rs11667521	AKT1S1	cis	cerebellum	SCAN

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44729800-44768600	ZNF genes & repeats	Adipose Nuclei	Adipose
2	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
3	chr19:44730200-44754600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:44742000-44763800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr19:44746200-44756000	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr19:44749600-44754600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr19:44750800-44754400	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr19:44751400-44756200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr19:44751600-44754200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr19:44752200-44754000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
11	chr19:44752200-44754000	ZNF genes & repeats	Colon Smooth Muscle	Colon
12	chr19:44752400-44753800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
13	chr19:44752400-44754200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr19:44752800-44754000	ZNF genes & repeats	Fetal Lung	lung
15	chr19:44752800-44754200	ZNF genes & repeats	A549	lung
16	chr19:44753000-44754000	ZNF genes & repeats	Fetal Muscle Leg	muscle
17	chr19:44753000-44754200	ZNF genes & repeats	Psoas Muscle	Psoas
18	chr19:44753200-44757800	Weak transcription	Left Ventricle	heart
19	chr19:44753400-44753800	ZNF genes & repeats	NH-A	brain
20	chr19:44753400-44754200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr19:44753600-44754200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
22	chr19:44753600-44754200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
23	chr19:44753600-44754200	Active TSS	Aorta	Aorta

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