Variant report

Variant	rs8106766
Chromosome Location	chr19:44769596-44769597
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44763153..44765827-chr19:44767005..44769957,2	MCF-7	breast:
2	chr19:44764453..44767160-chr19:44768719..44770239,2	K562	blood:

Variant related genes	Relation type
ENSG00000159915	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10405450	0.81[EUR][1000 genomes]
rs10410086	0.81[EUR][1000 genomes]
rs10423306	0.82[EUR][1000 genomes]
rs10775542	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11666199	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11667521	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11671074	0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12459795	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12460431	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12461251	0.82[ASN][1000 genomes]
rs12462557	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12462723	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12972784	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12975315	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12975546	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12980565	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2014501	0.87[EUR][1000 genomes]
rs2051058	0.85[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2051059	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2125578	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2125579	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2279072	0.85[EUR][1000 genomes]
rs2279073	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2356727	0.81[AMR][1000 genomes]
rs4592768	0.84[AMR][1000 genomes]
rs4802217	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs4802218	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4803694	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6509150	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7251682	0.82[EUR][1000 genomes]
rs7252577	0.87[EUR][1000 genomes]
rs7253196	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7259916	0.81[EUR][1000 genomes]
rs7508523	0.85[AMR][1000 genomes]
rs8101032	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8102037	0.82[EUR][1000 genomes]
rs8105073	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8108934	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs8109462	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8109706	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9304640	0.82[EUR][1000 genomes]
rs9646642	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9646643	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521923	chr19:44764064-44769974	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44730000-44775600	ZNF genes & repeats	Liver	Liver
2	chr19:44764600-44770000	Weak transcription	Fetal Kidney	kidney
3	chr19:44764600-44771000	Weak transcription	Psoas Muscle	Psoas
4	chr19:44764600-44778200	Weak transcription	HSMMtube	muscle
5	chr19:44764800-44769800	Weak transcription	Fetal Muscle Trunk	muscle
6	chr19:44764800-44770000	Weak transcription	Primary B cells from cord blood	blood
7	chr19:44764800-44770000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr19:44764800-44771200	Weak transcription	Thymus	Thymus
9	chr19:44764800-44777600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr19:44764800-44777600	Weak transcription	Placenta	Placenta
11	chr19:44764800-44782000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr19:44765000-44770000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr19:44765000-44770000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr19:44765000-44770200	Weak transcription	Fetal Intestine Small	intestine
15	chr19:44765000-44770200	Weak transcription	Fetal Stomach	stomach
16	chr19:44765000-44770200	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr19:44765000-44770400	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr19:44765000-44770400	Weak transcription	Brain Cingulate Gyrus	brain
19	chr19:44765000-44770800	Weak transcription	Fetal Muscle Leg	muscle
20	chr19:44765000-44771000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr19:44765000-44771200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr19:44765000-44772400	Weak transcription	A549	lung
23	chr19:44765000-44772600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr19:44765000-44773400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr19:44765000-44774800	Weak transcription	Fetal Lung	lung
26	chr19:44765000-44774800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr19:44765000-44775400	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr19:44765000-44777400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr19:44765000-44777400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr19:44765000-44777400	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr19:44765000-44777400	Weak transcription	Fetal Heart	heart
32	chr19:44765000-44777600	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr19:44765000-44777600	Weak transcription	Right Ventricle	heart
34	chr19:44765000-44778000	Weak transcription	Fetal Brain Male	brain
35	chr19:44765200-44769800	Weak transcription	Primary T cells from cord blood	blood
36	chr19:44765200-44770000	Weak transcription	Fetal Brain Female	brain
37	chr19:44765200-44777000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr19:44765200-44777600	Weak transcription	Dnd41	blood
39	chr19:44765400-44769600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr19:44765400-44770000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr19:44765400-44770200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr19:44765400-44770200	Weak transcription	Left Ventricle	heart
43	chr19:44765400-44771000	Weak transcription	Brain Anterior Caudate	brain
44	chr19:44765400-44771400	Weak transcription	Fetal Intestine Large	intestine
45	chr19:44765400-44773600	Weak transcription	HepG2	liver
46	chr19:44765400-44777600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr19:44767200-44770200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr19:44767200-44770200	Weak transcription	Ovary	ovary
49	chr19:44767600-44777400	Weak transcription	Brain Angular Gyrus	brain
50	chr19:44767800-44770200	Weak transcription	Brain Substantia Nigra	brain

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