Variant report

Variant	rs11666199
Chromosome Location	chr19:44727729-44727730
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10405450	0.86[EUR][1000 genomes]
rs10409155	0.83[ASN][1000 genomes]
rs10410086	0.86[EUR][1000 genomes]
rs10417451	0.81[ASN][1000 genomes]
rs10423306	0.87[EUR][1000 genomes]
rs10775542	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11667521	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11671074	0.80[ASN][1000 genomes]
rs12459795	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12460431	0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12461251	0.92[ASN][1000 genomes]
rs12462557	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12462723	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12609635	0.92[ASN][1000 genomes]
rs12972784	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12975315	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12975546	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12980565	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2051058	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2051059	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2125578	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2125579	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2168989	0.84[EUR][1000 genomes]
rs2279073	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2356727	0.91[ASN][1000 genomes]
rs2356752	0.87[ASN][1000 genomes]
rs4592768	0.81[AMR][1000 genomes]
rs4802209	0.81[ASN][1000 genomes]
rs4802210	0.83[ASN][1000 genomes]
rs4802217	0.84[ASN][1000 genomes]
rs4802218	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4803684	0.81[ASN][1000 genomes]
rs4803694	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62117771	0.92[ASN][1000 genomes]
rs6509145	0.83[ASN][1000 genomes]
rs6509150	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7248054	0.90[ASN][1000 genomes]
rs7248114	0.82[EUR][1000 genomes]
rs7251682	0.87[EUR][1000 genomes]
rs7253196	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7253533	0.84[EUR][1000 genomes]
rs7260304	0.85[EUR][1000 genomes]
rs7508523	0.82[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs8101032	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs8103838	0.86[ASN][1000 genomes]
rs8105073	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs8105479	0.92[ASN][1000 genomes]
rs8106766	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8108934	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8109462	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8109706	0.80[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs9304640	0.87[EUR][1000 genomes]
rs9646642	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9646643	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44717400-44739000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:44717600-44730200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr19:44717600-44739600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr19:44717800-44731600	Weak transcription	HSMMtube	muscle
5	chr19:44717800-44732200	Weak transcription	Stomach Mucosa	stomach
6	chr19:44718200-44732400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr19:44718200-44732400	Weak transcription	K562	blood
8	chr19:44718200-44732600	Weak transcription	HepG2	liver
9	chr19:44718200-44732800	Weak transcription	HMEC	breast
10	chr19:44718200-44738800	Weak transcription	Hela-S3	cervix
11	chr19:44718400-44732400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr19:44718400-44736400	Weak transcription	HUVEC	blood vessel
13	chr19:44722000-44730000	Weak transcription	Gastric	stomach
14	chr19:44722000-44730200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr19:44722000-44730800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr19:44722000-44732000	Weak transcription	Colonic Mucosa	Colon
17	chr19:44722000-44732400	Weak transcription	Fetal Heart	heart
18	chr19:44722200-44731000	Weak transcription	NHDF-Ad	bronchial
19	chr19:44722400-44731800	Weak transcription	Primary B cells from cord blood	blood
20	chr19:44722800-44732000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr19:44723200-44731200	Weak transcription	Fetal Kidney	kidney
22	chr19:44723200-44732400	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr19:44723400-44729600	Weak transcription	Fetal Stomach	stomach
24	chr19:44723400-44730000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr19:44723400-44730000	Weak transcription	Fetal Intestine Small	intestine
26	chr19:44723400-44730200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr19:44723400-44730200	Weak transcription	Aorta	Aorta
28	chr19:44723400-44730200	Weak transcription	Pancreas	Pancrea
29	chr19:44723400-44731600	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr19:44723400-44731800	Weak transcription	Left Ventricle	heart
31	chr19:44723400-44731800	Weak transcription	Right Ventricle	heart
32	chr19:44723600-44729800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr19:44723600-44729800	Weak transcription	Brain Germinal Matrix	brain
34	chr19:44723600-44729800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr19:44723600-44729800	Weak transcription	Lung	lung
36	chr19:44723600-44730000	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr19:44723600-44730000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr19:44723600-44730000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr19:44723600-44730000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr19:44723600-44730000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
41	chr19:44723600-44730000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr19:44723600-44730000	Weak transcription	Ovary	ovary
43	chr19:44723600-44730000	Weak transcription	Small Intestine	intestine
44	chr19:44723600-44730000	Weak transcription	Thymus	Thymus
45	chr19:44723600-44730200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr19:44723600-44730200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr19:44723600-44730200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr19:44723600-44730200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr19:44723600-44730200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr19:44723600-44730200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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