Variant report

Variant	rs7256402
Chromosome Location	chr19:44830205-44830206
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:44830119..44832268-chr19:44837781..44840582,2	K562	blood:
2	chr19:44807899..44809893-chr19:44829834..44832203,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159917	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1011567	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11670157	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11671074	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12151072	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12460431	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12972550	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12981298	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1434575	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1434576	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1897826	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2014501	0.92[ASN][1000 genomes]
rs2051058	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2196184	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2196186	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2196187	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2356727	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2356881	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4592768	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4802217	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4803697	0.80[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs67711424	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7251134	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7252577	0.81[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs733265	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7508523	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs8104642	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8109706	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9676368	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs984117	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:44823200-44856200	ZNF genes & repeats	Liver	Liver
2	chr19:44824800-44841000	ZNF genes & repeats	Adipose Nuclei	Adipose
3	chr19:44825000-44846600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
4	chr19:44825800-44831800	Weak transcription	Right Ventricle	heart
5	chr19:44827400-44831200	Weak transcription	Brain Angular Gyrus	brain
6	chr19:44827600-44830800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr19:44827800-44832000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr19:44828000-44845000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
9	chr19:44828200-44831600	Weak transcription	NH-A	brain
10	chr19:44828400-44846400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
11	chr19:44828600-44831000	ZNF genes & repeats	Brain Hippocampus Middle	brain
12	chr19:44828600-44832800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr19:44828600-44844200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr19:44828600-44845600	ZNF genes & repeats	Fetal Lung	lung
15	chr19:44828600-44848800	ZNF genes & repeats	Fetal Brain Female	brain
16	chr19:44828600-44851000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
17	chr19:44828800-44830400	ZNF genes & repeats	Colon Smooth Muscle	Colon
18	chr19:44828800-44831200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr19:44828800-44842600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
20	chr19:44828800-44846200	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr19:44828800-44846400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr19:44829000-44831600	Weak transcription	HSMMtube	muscle
23	chr19:44829000-44831800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr19:44829000-44832400	Weak transcription	Fetal Heart	heart
25	chr19:44829000-44844000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr19:44829200-44831200	Weak transcription	NHDF-Ad	bronchial
27	chr19:44829200-44831600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr19:44829200-44831600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr19:44829200-44831600	Weak transcription	Brain Anterior Caudate	brain
30	chr19:44829200-44831600	Weak transcription	Brain Cingulate Gyrus	brain
31	chr19:44829200-44831600	Weak transcription	Placenta	Placenta
32	chr19:44829200-44831600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr19:44829200-44831800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr19:44829200-44831800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr19:44829200-44831800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr19:44829200-44831800	Weak transcription	Fetal Stomach	stomach
37	chr19:44829200-44841200	ZNF genes & repeats	Primary hematopoietic stem cells	blood
38	chr19:44829400-44830400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr19:44829400-44831200	Weak transcription	Psoas Muscle	Psoas
40	chr19:44829400-44831600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr19:44829400-44831600	Weak transcription	Lung	lung
42	chr19:44829400-44831600	Weak transcription	Spleen	Spleen
43	chr19:44829400-44831600	Weak transcription	HSMM	muscle
44	chr19:44829400-44831800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr19:44829400-44831800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr19:44829600-44830400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr19:44829600-44830800	Weak transcription	Fetal Brain Male	brain
48	chr19:44829600-44831600	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr19:44829600-44831800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr19:44829800-44831200	Weak transcription	Ovary	ovary

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