Variant report

Variant	rs2212596
Chromosome Location	chr21:39968534-39968535
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13051259	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13052546	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2070526	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2244890	0.93[EUR][1000 genomes]
rs2255750	0.94[CHB][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs2836551	0.92[CEU][hapmap]
rs460574	0.82[GIH][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap]
rs464729	0.81[CEU][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap]
rs9789875	0.87[CEU][hapmap];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9789883	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9976134	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9977611	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2212596	DSCR10	cis	cerebellum	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39955800-39971200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:39964400-39968800	Weak transcription	Spleen	Spleen
3	chr21:39965200-39969800	Weak transcription	Aorta	Aorta
4	chr21:39965400-39969400	Weak transcription	Fetal Brain Male	brain
5	chr21:39966800-39968600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr21:39966800-39968600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr21:39967000-39971400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr21:39967400-39968600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr21:39968000-39968600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr21:39968200-39968600	Enhancers	NHEK	skin
11	chr21:39968200-39969000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr21:39968200-39969000	Bivalent Enhancer	NH-A	brain
13	chr21:39968200-39969200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr21:39968400-39968600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr21:39968400-39968600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr21:39968400-39969000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr21:39968400-39969000	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr21:39968400-39969000	Bivalent Enhancer	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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