Variant report

Variant	rs2244890
Chromosome Location	chr21:39965544-39965545
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs13051259	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13052546	0.97[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2070526	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2212596	0.93[EUR][1000 genomes]
rs2836551	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs386076	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs460574	0.90[ASN][1000 genomes]
rs460695	0.81[ASN][1000 genomes]
rs464729	0.96[ASN][1000 genomes]
rs467207	0.83[ASN][1000 genomes]
rs9789875	0.93[EUR][1000 genomes]
rs9789883	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9976134	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9977611	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39955800-39971200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr21:39956600-39966000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr21:39964400-39968800	Weak transcription	Spleen	Spleen
4	chr21:39965200-39965600	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr21:39965200-39969800	Weak transcription	Aorta	Aorta
6	chr21:39965400-39969400	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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