Variant report

Variant	rs464729
Chromosome Location	chr21:39976539-39976540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs13051259	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2070526	0.88[EUR][1000 genomes]
rs2212596	0.81[CEU][hapmap];0.89[GIH][hapmap];0.91[TSI][hapmap]
rs2244890	0.96[ASN][1000 genomes]
rs2836551	0.88[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs386076	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs460574	0.87[ASW][hapmap];0.88[CEU][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.86[LWK][hapmap];0.96[MEX][hapmap];0.80[MKK][hapmap];0.89[TSI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs460695	0.84[ASN][1000 genomes]
rs467207	0.91[CHD][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9789883	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9976134	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs9977611	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv965955	chr21:39974678-39976565	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs464729	GART	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:39969000-39976600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr21:39970200-39977200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr21:39970400-39976600	Weak transcription	Fetal Brain Male	brain
4	chr21:39973000-39982000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr21:39974800-39977400	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr21:39975400-39977600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr21:39975600-39977200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr21:39976000-39977200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr21:39976400-39977800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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