Variant report

Variant	rs2214087
Chromosome Location	chr7:104029449-104029450
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:104028797..104030802-chr7:104033440..104036374,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10249235	0.95[YRI][hapmap]
rs10953427	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10953428	0.84[GIH][hapmap];0.87[MEX][hapmap];0.96[YRI][hapmap]
rs10953432	0.84[GIH][hapmap]
rs1123760	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs11972919	0.97[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12216592	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1468143	1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.83[YRI][hapmap]
rs1468144	0.82[GIH][hapmap];0.87[MEX][hapmap];0.96[YRI][hapmap]
rs17390895	0.95[YRI][hapmap]
rs1989823	0.84[GIH][hapmap]
rs2040584	0.84[GIH][hapmap]
rs2097667	0.81[GIH][hapmap];0.81[JPT][hapmap]
rs2188482	0.96[YRI][hapmap]
rs2188493	0.95[MEX][hapmap]
rs2188494	0.84[GIH][hapmap];0.87[MEX][hapmap];0.91[YRI][hapmap]
rs2214084	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs2214086	0.84[GIH][hapmap];0.87[MEX][hapmap];0.96[YRI][hapmap]
rs4236567	0.96[YRI][hapmap]
rs4236568	0.82[ASN][1000 genomes]
rs4727596	0.83[YRI][hapmap]
rs4727599	0.84[GIH][hapmap]
rs4730001	0.84[GIH][hapmap]
rs4730002	0.95[YRI][hapmap]
rs4730006	0.84[GIH][hapmap]
rs6465983	0.91[MEX][hapmap]
rs6465985	0.84[GIH][hapmap]
rs6951873	0.82[GIH][hapmap]
rs7778325	0.96[YRI][hapmap]
rs7790817	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7798273	0.84[GIH][hapmap];0.87[MEX][hapmap];0.83[YRI][hapmap]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2214087	ZNHIT1	cis	parietal	SCAN
rs2214087	PLOD3	cis	parietal	SCAN
rs2214087	ACTL6B	cis	parietal	SCAN
rs2214087	COG5	cis	cerebellum	SCAN

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links