Variant report

Variant	rs2260769
Chromosome Location	chr11:93137475-93137476
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:93135720..93137774-chr11:93142733..93145703,2	K562	blood:

Variant related genes	Relation type
ENSG00000165325	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1004417	0.84[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1456239	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1456242	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs1869913	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs1960665	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2124559	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2259469	0.81[AMR][1000 genomes]
rs2259630	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2605575	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2605576	0.80[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs2605577	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2605578	1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2605579	0.81[AMR][1000 genomes]
rs2658771	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2658774	0.89[AMR][1000 genomes]
rs2925353	1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2925363	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs3019203	0.88[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3019204	0.89[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3019218	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3019229	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs3020055	0.81[AFR][1000 genomes]
rs3020070	0.82[AMR][1000 genomes]
rs3020071	0.82[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs3020072	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs3020075	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs975916	0.83[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1035530	chr11:93114111-93148948	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv555941	chr11:93129893-93181050	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv439	chr11:93135936-93171682	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93126800-93145200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:93137200-93137600	Active TSS	Pancreatic Islets	Pancreatic Islet

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