Variant report

Variant	rs2124559
Chromosome Location	chr11:93089156-93089157
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1004417	0.81[CEU][hapmap];0.95[GIH][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs1456239	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1456242	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.82[MKK][hapmap];0.98[TSI][hapmap]
rs1598546	0.96[CEU][hapmap];0.98[GIH][hapmap];0.83[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1598547	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1869913	0.92[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1960665	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1975819	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2259469	0.95[GIH][hapmap];0.80[TSI][hapmap];0.82[EUR][1000 genomes]
rs2259630	0.82[EUR][1000 genomes]
rs2260769	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2605575	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs2605576	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs2605577	0.80[EUR][1000 genomes]
rs2605578	0.83[EUR][1000 genomes]
rs2605579	0.95[GIH][hapmap];0.82[TSI][hapmap];0.81[EUR][1000 genomes]
rs2658771	0.89[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs2658774	0.84[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs2925353	0.85[CEU][hapmap];0.98[GIH][hapmap];0.83[MEX][hapmap];0.82[TSI][hapmap];0.89[EUR][1000 genomes]
rs2925359	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2925363	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3019203	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3019204	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3019218	0.84[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.87[MEX][hapmap];0.88[MKK][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3019219	0.92[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3019220	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3019227	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3019229	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3019230	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3020070	0.87[EUR][1000 genomes]
rs3020071	0.89[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3020072	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3020075	0.89[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];0.89[TSI][hapmap];0.92[EUR][1000 genomes]
rs3020080	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs975916	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv468793	chr11:93068163-93129893	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2124559	CCDC67	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93089000-93089200	Enhancers	Pancreatic Islets	Pancreatic Islet

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