Variant report

Variant	rs1975819
Chromosome Location	chr11:93081827-93081828
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1004417	0.90[EUR][1000 genomes]
rs1456239	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1598546	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1598547	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1869913	0.88[EUR][1000 genomes]
rs1960665	0.88[EUR][1000 genomes]
rs2124559	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2259469	0.84[EUR][1000 genomes]
rs2259630	0.84[EUR][1000 genomes]
rs2605575	0.87[EUR][1000 genomes]
rs2605576	0.90[EUR][1000 genomes]
rs2605577	0.82[EUR][1000 genomes]
rs2605578	0.85[EUR][1000 genomes]
rs2605579	0.83[EUR][1000 genomes]
rs2658771	0.87[EUR][1000 genomes]
rs2658774	0.90[EUR][1000 genomes]
rs2925353	0.90[EUR][1000 genomes]
rs2925359	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2925363	0.83[EUR][1000 genomes]
rs3019203	0.88[EUR][1000 genomes]
rs3019204	0.88[EUR][1000 genomes]
rs3019218	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3019219	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3019220	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019227	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3019229	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3019230	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3020055	0.80[EUR][1000 genomes]
rs3020070	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3020071	0.88[EUR][1000 genomes]
rs3020072	0.84[EUR][1000 genomes]
rs3020075	0.87[EUR][1000 genomes]
rs3020080	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898180	chr11:93045561-93082053	Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv468793	chr11:93068163-93129893	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93078600-93082000	Weak transcription	K562	blood
2	chr11:93081200-93083400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr11:93081400-93082000	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr11:93081400-93082000	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr11:93081600-93082000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr11:93081600-93082600	Enhancers	H1 Cell Line	embryonic stem cell
7	chr11:93081600-93083400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr11:93081600-93083800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr11:93081800-93082000	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr11:93081800-93082000	Enhancers	Pancreatic Islets	Pancreatic Islet
11	chr11:93081800-93083400	Enhancers	H9 Cell Line	embryonic stem cell

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