Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1004417	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1598546	0.83[EUR][1000 genomes]
rs1598547	0.83[EUR][1000 genomes]
rs1869913	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1960665	0.82[EUR][1000 genomes]
rs1975819	0.80[EUR][1000 genomes]
rs2259469	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2259630	0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2260769	0.81[AFR][1000 genomes]
rs2605575	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2605576	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2605577	0.82[AFR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2605578	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2605579	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2658771	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2658774	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2925353	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2925359	0.83[EUR][1000 genomes]
rs2925363	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3019203	0.82[EUR][1000 genomes]
rs3019204	0.82[EUR][1000 genomes]
rs3019219	0.80[EUR][1000 genomes]
rs3019220	0.80[EUR][1000 genomes]
rs3019227	0.83[EUR][1000 genomes]
rs3020070	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3020071	0.82[EUR][1000 genomes]
rs3020075	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv468793	chr11:93068163-93129893	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
4	nsv1035530	chr11:93114111-93148948	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93111200-93128200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:93116800-93126000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:93118600-93124600	Weak transcription	Aorta	Aorta
4	chr11:93121000-93130200	Weak transcription	K562	blood
5	chr11:93122400-93123200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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