Variant report

Variant	rs1960665
Chromosome Location	chr11:93108546-93108547
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1004417	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1456239	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1598546	0.89[EUR][1000 genomes]
rs1598547	0.89[EUR][1000 genomes]
rs1869913	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1975819	0.88[EUR][1000 genomes]
rs2124559	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2259469	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2259630	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2260769	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2605575	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2605576	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2605577	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2605578	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2605579	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2658771	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2658774	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2925353	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2925359	0.89[EUR][1000 genomes]
rs2925363	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3019203	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3019204	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3019218	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3019219	0.88[EUR][1000 genomes]
rs3019220	0.88[EUR][1000 genomes]
rs3019227	0.89[EUR][1000 genomes]
rs3019229	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3019230	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3020055	0.82[EUR][1000 genomes]
rs3020070	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3020071	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3020072	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3020075	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3020080	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv468793	chr11:93068163-93129893	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93106200-93117200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:93106400-93116600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links