Variant report

Variant	rs1456239
Chromosome Location	chr11:93092671-93092672
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1004417	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs1456242	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1598546	0.96[CEU][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1598547	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1869913	0.93[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1960665	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1975819	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2124559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2259469	0.81[EUR][1000 genomes]
rs2259630	0.81[EUR][1000 genomes]
rs2260769	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs2605575	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs2605576	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs2605578	0.82[EUR][1000 genomes]
rs2605579	0.80[EUR][1000 genomes]
rs2658771	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes]
rs2658774	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs2925353	0.84[CEU][hapmap];0.88[EUR][1000 genomes]
rs2925359	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2925363	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3019203	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3019204	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3019218	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3019219	0.92[CEU][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3019220	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3019227	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3019229	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3019230	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3020070	0.87[EUR][1000 genomes]
rs3020071	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3020072	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3020075	0.89[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes]
rs3020080	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs975916	0.89[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv468793	chr11:93068163-93129893	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93090200-93094400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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