Variant report

Variant	rs2925359
Chromosome Location	chr11:93094354-93094355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-KIAA1731-4	chr11:93094328-93094680	ucscGeneNc_uc001pdv_1

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1004417	0.93[EUR][1000 genomes]
rs1456239	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1598546	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1598547	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1869913	0.89[EUR][1000 genomes]
rs1960665	0.89[EUR][1000 genomes]
rs1975819	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2124559	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2259469	0.86[EUR][1000 genomes]
rs2259630	0.86[EUR][1000 genomes]
rs2605575	0.89[EUR][1000 genomes]
rs2605576	0.92[EUR][1000 genomes]
rs2605577	0.84[EUR][1000 genomes]
rs2605578	0.87[EUR][1000 genomes]
rs2605579	0.85[EUR][1000 genomes]
rs2658771	0.88[EUR][1000 genomes]
rs2658774	0.93[EUR][1000 genomes]
rs2925353	0.93[EUR][1000 genomes]
rs2925363	0.84[EUR][1000 genomes]
rs3019203	0.89[EUR][1000 genomes]
rs3019204	0.89[EUR][1000 genomes]
rs3019218	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3019219	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3019220	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3019227	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3019229	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3019230	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3020055	0.83[EUR][1000 genomes]
rs3020070	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3020071	0.89[EUR][1000 genomes]
rs3020072	0.85[EUR][1000 genomes]
rs3020075	0.88[EUR][1000 genomes]
rs3020080	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv468793	chr11:93068163-93129893	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93090200-93094400	Weak transcription	Pancreatic Islets	Pancreatic Islet

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links