Variant report

Variant	rs2925363
Chromosome Location	chr11:93114521-93114522
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	KAP1	chr11:93114483-93114865	K562	blood:	n/a	n/a
2	POLR2A	chr11:93112592-93114606	K562	blood:	n/a	n/a

Variant related genes	Relation type
CCDC67	TF binding region

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1004417	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1456239	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1598546	0.84[EUR][1000 genomes]
rs1598547	0.84[EUR][1000 genomes]
rs1869913	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1960665	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1975819	0.83[EUR][1000 genomes]
rs2124559	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2259469	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2259630	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2260769	0.86[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2605575	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2605576	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2605577	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2605578	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2605579	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2658771	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2658774	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2925353	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2925359	0.84[EUR][1000 genomes]
rs3019203	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3019204	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3019218	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3019219	0.83[EUR][1000 genomes]
rs3019220	0.83[EUR][1000 genomes]
rs3019227	0.84[EUR][1000 genomes]
rs3019229	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3019230	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3020055	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3020070	0.87[EUR][1000 genomes]
rs3020071	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3020072	0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3020075	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3020080	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv468793	chr11:93068163-93129893	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
4	nsv1035530	chr11:93114111-93148948	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93106200-93117200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr11:93106400-93116600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr11:93111200-93128200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:93111400-93116400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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