Variant report

Variant	rs2270611
Chromosome Location	chr15:34659257-34659258
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr15:34658243-34660583	IMR90	lung:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34659039-34659048 chr15:34659041-34659050 chr15:34659042-34659049 chr15:34658698-34658708 chr15:34659037-34659052
2	POLR2A	chr15:34659227-34660205	HUVEC	blood vessel:	n/a	n/a
3	POLR2A	chr15:34659244-34660094	ECC-1	luminal epithelium:	n/a	n/a
4	MAZ	chr15:34658423-34660254	K562	blood:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34659039-34659048 chr15:34659041-34659050 chr15:34659042-34659049 chr15:34658698-34658708 chr15:34659037-34659052
5	TAF1	chr15:34659154-34660129	ECC-1	luminal epithelium:	n/a	n/a
6	MAX	chr15:34658968-34660274	K562	blood:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34659039-34659048 chr15:34659041-34659050 chr15:34659042-34659049 chr15:34660055-34660065 chr15:34659037-34659052
7	POLR2A	chr15:34659159-34660075	PFSK-1	brain:	n/a	n/a
8	SIN3AK20	chr15:34659233-34660409	MCF-7	breast:	n/a	n/a
9	YY1	chr15:34659255-34660527	GM12878	blood:	n/a	chr15:34659810-34659819
10	POLR2A	chr15:34659162-34660596	GM12892	blood:	n/a	n/a
11	TAF1	chr15:34659249-34660121	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr15:34658507-34660252	GM19193	blood:	n/a	n/a
13	POLR2A	chr15:34659179-34660273	GM12878	blood:	n/a	n/a
14	MYC	chr15:34658464-34660372	K562	blood:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34659039-34659048 chr15:34659041-34659050 chr15:34659042-34659049 chr15:34658698-34658708 chr15:34660055-34660065 chr15:34659037-34659052
15	HMGN3	chr15:34658575-34660116	K562	blood:	n/a	n/a
16	MAX	chr15:34658291-34660478	A549	lung:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34659039-34659048 chr15:34659041-34659050 chr15:34659042-34659049 chr15:34658698-34658708 chr15:34660055-34660065 chr15:34659037-34659052
17	POLR2A	chr15:34659244-34660117	HCT-116	colon:	n/a	n/a
18	POLR2A	chr15:34658507-34660200	HUVEC	blood vessel:	n/a	n/a
19	POLR2A	chr15:34659232-34659445	HepG2	liver:	n/a	n/a
20	MYC	chr15:34658474-34660480	NB4	blood:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34659039-34659048 chr15:34659041-34659050 chr15:34659042-34659049 chr15:34658698-34658708 chr15:34660055-34660065 chr15:34659037-34659052
21	MAX	chr15:34658183-34660371	GM12878	blood:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34659039-34659048 chr15:34659041-34659050 chr15:34659042-34659049 chr15:34658698-34658708 chr15:34660055-34660065 chr15:34659037-34659052
22	POLR2A	chr15:34658975-34660598	H1-hESC	embryonic stem cell:	n/a	n/a
23	MYC	chr15:34658470-34660294	K562	blood:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34659039-34659048 chr15:34659041-34659050 chr15:34659042-34659049 chr15:34658698-34658708 chr15:34660055-34660065 chr15:34659037-34659052
24	YY1	chr15:34659231-34660132	K562	blood:	n/a	chr15:34659810-34659819
25	POLR2A	chr15:34658556-34660271	H1-hESC	embryonic stem cell:	n/a	n/a
26	POLR2A	chr15:34659047-34660961	GM12892	blood:	n/a	n/a
27	POLR2A	chr15:34659085-34660304	Hela-S3	cervix:	n/a	n/a
28	CTCF	chr15:34659213-34660466	SK-N-SH	brain:	n/a	chr15:34659923-34659939 chr15:34659917-34659938 chr15:34659922-34659940
29	YY1	chr15:34659218-34659703	SK-N-SH_RA	brain:	n/a	n/a
30	CHD2	chr15:34658428-34660331	Hela-S3	cervix:	n/a	n/a
31	MAX	chr15:34659244-34660337	K562	blood:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34660055-34660065
32	TAF1	chr15:34659256-34659899	PFSK-1	brain:	n/a	n/a
33	MAZ	chr15:34658459-34660255	Hela-S3	cervix:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34659039-34659048 chr15:34659041-34659050 chr15:34659042-34659049 chr15:34658698-34658708 chr15:34659037-34659052
34	POLR2A	chr15:34659168-34660198	K562	blood:	n/a	n/a
35	POLR2A	chr15:34659199-34660450	K562	blood:	n/a	n/a
36	POLR2A	chr15:34659035-34660185	GM10847	blood:	n/a	n/a
37	SIN3AK20	chr15:34659250-34659773	HepG2	liver:	n/a	n/a
38	POLR2A	chr15:34659248-34660305	HL-60	blood:	n/a	n/a
39	POLR2A	chr15:34659240-34659418	HepG2	liver:	n/a	n/a
40	REST	chr15:34657805-34660414	H1-neurons	neurons:	n/a	chr15:34659499-34659509 chr15:34658685-34658698 chr15:34658576-34658585 chr15:34659359-34659377 chr15:34658688-34658701
41	POLR2A	chr15:34659156-34660194	ProgFib	skin:	n/a	n/a
42	POLR2A	chr15:34659142-34660297	Hela-S3	cervix:	n/a	n/a
43	FOXP2	chr15:34659243-34660138	PFSK-1	brain:	n/a	n/a
44	MAX	chr15:34658490-34660313	Hela-S3	cervix:	n/a	chr15:34660057-34660073 chr15:34659339-34659349 chr15:34659039-34659048 chr15:34659041-34659050 chr15:34659042-34659049 chr15:34658698-34658708 chr15:34660055-34660065 chr15:34659037-34659052
45	YY1	chr15:34659242-34660118	HepG2	liver:	n/a	chr15:34659810-34659819
46	POLR2A	chr15:34659130-34660515	GM12878	blood:	n/a	n/a
47	POLR2A	chr15:34658488-34660260	K562	blood:	n/a	n/a
48	SIN3A	chr15:34658276-34660327	H1-hESC	embryonic stem cell:	n/a	chr15:34659664-34659675 chr15:34659474-34659487 chr15:34658685-34658696 chr15:34659332-34659345
49	POLR2A	chr15:34659228-34659962	SK-N-SH	brain:	n/a	n/a
50	POLR2A	chr15:34659220-34660573	GM12892	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:34654804..34656714-chr15:34658910..34661703,3	K562	blood:
2	chr15:34658931..34659843-chr17:42401742..42402293,2	HCT-116	colon:
3	chr15:34393027..34397233-chr15:34658612..34660877,5	K562	blood:
4	chr15:34632008..34636763-chr15:34655757..34660926,8	K562	blood:
5	chr15:34635280..34637526-chr15:34658001..34660457,2	K562	blood:
6	chr11:62608503..62609297-chr15:34658796..34659673,3	Hela-S3	cervix:
7	chr15:34515223..34518649-chr15:34658701..34662221,4	K562	blood:
8	chr15:34635005..34635906-chr15:34659046..34660693,6	K562	blood:
9	chr15:34658082..34661057-chr15:34874863..34877414,3	MCF-7	breast:
10	chr15:34634571..34635945-chr15:34658808..34660439,12	MCF-7	breast:
11	chr15:34658959..34659493-chr17:56756873..56757469,2	Hela-S3	cervix:
12	chr15:34659251..34659865-chr9:131940113..131940706,2	Hela-S3	cervix:
13	chr15:34659129..34659929-chr17:79478869..79479844,2	HCT-116	colon:
14	chr15:34655711..34662054-chr15:34662110..34667087,9	K562	blood:
15	chr15:34633629..34635584-chr15:34657779..34659599,2	MCF-7	breast:
16	chr15:34500871..34503422-chr15:34659158..34662481,4	K562	blood:

Variant related genes	Relation type
LPCAT4	TF binding region
ENSG00000182405	Chromatin interaction
ENSG00000013306	Chromatin interaction
ENSG00000134153	Chromatin interaction
ENSG00000133316	Chromatin interaction
ENSG00000215252	Chromatin interaction
ENSG00000259904	Chromatin interaction
ENSG00000266205	Chromatin interaction
ENSG00000200997	Chromatin interaction
ENSG00000184009	Chromatin interaction
ENSG00000128463	Chromatin interaction
ENSG00000188483	Chromatin interaction
ENSG00000184507	Chromatin interaction
ENSG00000182117	Chromatin interaction
ENSG00000176454	Chromatin interaction
ENSG00000134152	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:43 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052804	chr15:34498529-34841447	Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv542341	chr15:34498529-34841447	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv1798578	chr15:34543021-34988247	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
4	esv1804312	chr15:34543021-34988247	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
5	esv1821622	chr15:34543021-34988247	Active TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	esv1850950	chr15:34543021-34988247	Active TSS Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
7	esv2758376	chr15:34543021-34988247	Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
8	esv2760024	chr15:34543021-34988247	Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
9	nsv428303	chr15:34543021-34988247	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
10	nsv1036475	chr15:34552879-34841587	Bivalent/Poised TSS Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
11	nsv542342	chr15:34552879-34841587	Active TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
12	nsv1048550	chr15:34553078-34841447	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
13	nsv542343	chr15:34553078-34841447	Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
14	nsv471682	chr15:34560451-34882630	Enhancers Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
15	nsv469547	chr15:34594557-34757807	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
16	nsv482528	chr15:34594557-34757807	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases
17	esv1817014	chr15:34598601-34911177	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
18	esv1817924	chr15:34598601-34911177	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
19	esv1847172	chr15:34598601-34911177	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
20	esv1802396	chr15:34598601-34988247	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
21	esv1809360	chr15:34598601-34988247	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
22	esv1844776	chr15:34598601-34988247	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
23	nsv427957	chr15:34598601-34988247	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
24	nsv1039577	chr15:34624178-34962093	Bivalent Enhancer Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
25	nsv542344	chr15:34624178-34962093	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
26	nsv542345	chr15:34626815-34841586	Strong transcription Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
27	nsv542346	chr15:34627015-34841447	Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
28	nsv915918	chr15:34627109-34841422	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
29	nsv916680	chr15:34627109-34964198	Active TSS Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
30	esv1822549	chr15:34628041-34909164	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
31	nsv1038524	chr15:34628041-34962093	Flanking Bivalent TSS/Enh Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
32	nsv542347	chr15:34628041-34962093	Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
33	nsv1042687	chr15:34635218-35000806	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
34	esv1843690	chr15:34641090-34909164	Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
35	esv1802636	chr15:34641223-34880216	Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
36	esv1850192	chr15:34643735-34880216	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
37	nsv1485	chr15:34646207-34893740	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
38	nsv517751	chr15:34647568-34871296	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
39	nsv471236	chr15:34652683-34800594	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	29 gene(s)	inside rSNPs	diseases
40	esv1814737	chr15:34653046-34880216	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
41	nsv984049	chr15:34657736-34700792	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	25 gene(s)	inside rSNPs	n/a
42	esv3402810	chr15:34658010-34660808	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	n/a
43	nsv1050834	chr15:34658419-34855806	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34657600-34659400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
2	chr15:34657600-34660600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:34657800-34660200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr15:34657800-34660400	Active TSS	Gastric	stomach
5	chr15:34658000-34660400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:34658000-34660400	Active TSS	Right Ventricle	heart
7	chr15:34658000-34660600	Active TSS	HUES48 Cell Line	embryonic stem cell
8	chr15:34658200-34659800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr15:34658200-34660000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:34658200-34660000	Active TSS	Brain Angular Gyrus	brain
11	chr15:34658200-34660000	Active TSS	Fetal Heart	heart
12	chr15:34658200-34660000	Active TSS	Fetal Kidney	kidney
13	chr15:34658200-34660000	Active TSS	GM12878-XiMat	blood
14	chr15:34658200-34660400	Active TSS	Left Ventricle	heart
15	chr15:34658200-34660600	Active TSS	Pancreatic Islets	Pancreatic Islet
16	chr15:34658200-34660800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr15:34658400-34660000	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr15:34658400-34660000	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr15:34658400-34660000	Active TSS	HUES6 Cell Line	embryonic stem cell
20	chr15:34658400-34660000	Active TSS	HUES64 Cell Line	embryonic stem cell
21	chr15:34658400-34660000	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr15:34658400-34660000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:34658400-34660000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:34658400-34660000	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:34658400-34660000	Active TSS	Brain Hippocampus Middle	brain
26	chr15:34658400-34660000	Active TSS	Fetal Brain Male	brain
27	chr15:34658400-34660000	Active TSS	Rectal Mucosa Donor 29	rectum
28	chr15:34658400-34660000	Active TSS	Stomach Mucosa	stomach
29	chr15:34658400-34660000	Active TSS	HepG2	liver
30	chr15:34658400-34660200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr15:34658400-34660200	Active TSS	iPS-20b Cell Line	embryonic stem cell
32	chr15:34658400-34660200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr15:34658400-34660200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr15:34658400-34660200	Active TSS	Small Intestine	intestine
35	chr15:34658400-34660200	Active TSS	A549	lung
36	chr15:34658400-34660400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
37	chr15:34658400-34660400	Active TSS	H9 Cell Line	embryonic stem cell
38	chr15:34658400-34660400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr15:34658400-34660400	Active TSS	Fetal Intestine Small	intestine
40	chr15:34658400-34660400	Active TSS	Ovary	ovary
41	chr15:34658400-34660400	Active TSS	NHDF-Ad	bronchial
42	chr15:34658400-34660600	Active TSS	Fetal Intestine Large	intestine
43	chr15:34658400-34660600	Active TSS	Sigmoid Colon	Sigmoid Colon
44	chr15:34658400-34660800	Active TSS	ES-I3 Cell Line	embryonic stem cell
45	chr15:34658400-34660800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr15:34658400-34660800	Active TSS	NHLF	lung
47	chr15:34658600-34659400	Active TSS	Right Atrium	heart
48	chr15:34658600-34659600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr15:34658600-34659600	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:34658600-34659800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links