Variant report

Variant	rs2470813
Chromosome Location	chr3:98768675-98768676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs12054181	1.00[JPT][hapmap]
rs1837500	1.00[JPT][hapmap]
rs1967009	0.93[JPT][hapmap]
rs2062059	0.86[JPT][hapmap]
rs2119187	1.00[JPT][hapmap]
rs2119188	1.00[JPT][hapmap]
rs2246861	1.00[JPT][hapmap]
rs2439222	1.00[JPT][hapmap]
rs2439223	1.00[JPT][hapmap]
rs2439236	1.00[JPT][hapmap]
rs2449040	0.93[JPT][hapmap]
rs2449063	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2454673	1.00[JPT][hapmap]
rs2454682	0.81[CHB][hapmap];1.00[JPT][hapmap]
rs2454685	1.00[JPT][hapmap]
rs2462234	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2462235	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2462237	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2462239	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2470759	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2470761	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2470825	1.00[JPT][hapmap]
rs2470857	1.00[JPT][hapmap]
rs2470859	1.00[JPT][hapmap]
rs2470861	1.00[JPT][hapmap]
rs2470881	1.00[JPT][hapmap]
rs2470885	1.00[JPT][hapmap]
rs9289683	1.00[JPT][hapmap]
rs9835142	1.00[JPT][hapmap]
rs9852950	0.82[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv432463	chr3:98751310-98796310	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv1004227	chr3:98751371-98803792	Enhancers ZNF genes & repeats Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv460769	chr3:98766326-98804408	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv591089	chr3:98766326-98804408	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2470813	ST3GAL6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98767800-98768800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:98768000-98768800	Enhancers	NHDF-Ad	bronchial
3	chr3:98768000-98769000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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