Variant report

Variant rs2439223
Chromosome Location chr3:98613510-98613511
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:76 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:98593800-98619400 Weak transcription Small Intestine intestine
2 chr3:98594400-98616600 Weak transcription Fetal Brain Male brain
3 chr3:98597400-98619000 Weak transcription Primary hematopoietic stem cells blood
4 chr3:98599800-98618400 Weak transcription Fetal Brain Female brain
5 chr3:98600600-98618000 Weak transcription Fetal Muscle Trunk muscle
6 chr3:98600600-98618000 Weak transcription Fetal Thymus thymus
7 chr3:98602200-98613600 Genic enhancers HSMM muscle
8 chr3:98602400-98613600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
9 chr3:98604400-98614600 Genic enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr3:98605000-98618600 Weak transcription Fetal Stomach stomach
11 chr3:98606400-98618400 Weak transcription Fetal Kidney kidney
12 chr3:98606600-98618000 Transcr. at gene 5' and 3' Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
13 chr3:98608800-98614400 Enhancers K562 blood
14 chr3:98609000-98615800 Enhancers HUES64 Cell Line embryonic stem cell
15 chr3:98609400-98613800 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
16 chr3:98609800-98613800 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
17 chr3:98609800-98614200 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr3:98610400-98615000 Transcr. at gene 5' and 3' Osteobl bone
19 chr3:98610400-98615800 Transcr. at gene 5' and 3' NH-A brain
20 chr3:98610400-98616600 Transcr. at gene 5' and 3' A549 lung
21 chr3:98610800-98614200 Enhancers Right Ventricle heart
22 chr3:98610800-98618400 Weak transcription Brain Anterior Caudate brain
23 chr3:98610800-98618400 Enhancers Fetal Heart heart
24 chr3:98610800-98618600 Weak transcription Duodenum Smooth Muscle Duodenum
25 chr3:98611200-98617000 Weak transcription Rectal Smooth Muscle rectum
26 chr3:98611400-98618800 Weak transcription Skeletal Muscle Male skeletal muscle
27 chr3:98611400-98619200 Weak transcription Skeletal Muscle Female skeletal muscle
28 chr3:98611600-98616600 Weak transcription Fetal Lung lung
29 chr3:98611800-98618400 Weak transcription Colon Smooth Muscle Colon
30 chr3:98611800-98618600 Weak transcription Fetal Adrenal Gland Adrenal Gland
31 chr3:98612000-98613600 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
32 chr3:98612000-98614800 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
33 chr3:98612000-98618800 Weak transcription Psoas Muscle Psoas
34 chr3:98612400-98613600 Enhancers HUES48 Cell Line embryonic stem cell
35 chr3:98612400-98615000 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
36 chr3:98612600-98613600 Genic enhancers IMR90 fetal lung fibroblasts Cell Line lung
37 chr3:98612600-98613600 Transcr. at gene 5' and 3' NHEK skin
38 chr3:98612600-98613800 Enhancers Right Atrium heart
39 chr3:98612600-98614200 Enhancers Left Ventricle heart
40 chr3:98612600-98614800 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin02 Skin
41 chr3:98612600-98615000 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin02 Skin
42 chr3:98612600-98616000 Transcr. at gene 5' and 3' Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr3:98612600-98616000 Transcr. at gene 5' and 3' HMEC breast
44 chr3:98612600-98618400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
45 chr3:98612800-98613600 Enhancers ES-I3 Cell Line embryonic stem cell
46 chr3:98612800-98613600 Enhancers H1 Cell Line embryonic stem cell
47 chr3:98612800-98613600 Enhancers iPS-20b Cell Line embryonic stem cell
48 chr3:98612800-98614600 Enhancers Ovary ovary
49 chr3:98612800-98617400 Weak transcription iPS-15b Cell Line embryonic stem cell
50 chr3:98612800-98618400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell

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