Variant report

Variant	rs6785935
Chromosome Location	chr3:98525983-98525984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:98523635-98529478	U87	brain:	n/a	n/a
2	POLR2A	chr3:98523592-98529440	U87	brain:	n/a	n/a
3	FOS	chr3:98525877-98526192	MCF10A-Er-Src	breast:	n/a	chr3:98526032-98526041 chr3:98526033-98526040 chr3:98526033-98526042 chr3:98526032-98526042 chr3:98526032-98526042 chr3:98526031-98526043
4	JUND	chr3:98525557-98526193	HepG2	liver:	n/a	chr3:98526032-98526041 chr3:98526033-98526040 chr3:98526033-98526042 chr3:98526032-98526042 chr3:98526032-98526042 chr3:98526031-98526042 chr3:98526031-98526043
5	POLR2A	chr3:98523586-98529440	U87	brain:	n/a	n/a
6	FOS	chr3:98525948-98526159	MCF10A-Er-Src	breast:	n/a	chr3:98526032-98526041 chr3:98526033-98526040 chr3:98526033-98526042 chr3:98526032-98526042 chr3:98526032-98526042 chr3:98526031-98526043
7	FOS	chr3:98525875-98526177	MCF10A-Er-Src	breast:	n/a	chr3:98526032-98526041 chr3:98526033-98526040 chr3:98526033-98526042 chr3:98526032-98526042 chr3:98526032-98526042 chr3:98526031-98526043
8	FOS	chr3:98525879-98526140	MCF10A-Er-Src	breast:	n/a	chr3:98526032-98526041 chr3:98526033-98526040 chr3:98526033-98526042 chr3:98526032-98526042 chr3:98526032-98526042 chr3:98526031-98526043
9	POLR2A	chr3:98523621-98529478	U87	brain:	n/a	n/a
10	POLR2A	chr3:98524325-98526327	A549	lung:	n/a	n/a
11	FOS	chr3:98525556-98526213	HUVEC	blood vessel:	n/a	chr3:98526032-98526041 chr3:98526033-98526040 chr3:98526033-98526042 chr3:98526032-98526042 chr3:98526032-98526042 chr3:98526031-98526043

Variant related genes	Relation type
RNU6-26P	TF binding region

Extended variants
information (count: 130 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs1062196	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12054181	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12107050	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12330170	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12490832	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13060012	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs14310	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1440150	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1440151	0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1440152	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1440153	0.97[GIH][hapmap];0.86[TSI][hapmap]
rs17270593	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17270986	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs1837500	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1866677	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1866678	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1866679	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1875086	0.81[ASN][1000 genomes]
rs1967009	0.94[CHB][hapmap];0.87[JPT][hapmap]
rs2028393	0.81[ASN][1000 genomes]
rs2062059	0.94[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap]
rs2119187	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2119188	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.80[YRI][hapmap];0.83[ASN][1000 genomes]
rs2246861	1.00[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs2262597	0.89[ASN][1000 genomes]
rs2279761	0.84[EUR][1000 genomes]
rs2290067	0.88[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2334230	1.00[CEU][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2439213	0.88[ASN][1000 genomes]
rs2439214	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2439215	0.89[ASN][1000 genomes]
rs2439217	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2439218	0.89[ASN][1000 genomes]
rs2439220	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2439222	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap];0.81[ASN][1000 genomes]
rs2439223	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[ASN][1000 genomes]
rs2439224	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs2439225	0.81[ASN][1000 genomes]
rs2439226	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2439228	0.92[ASN][1000 genomes]
rs2439229	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2439231	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.93[ASN][1000 genomes]
rs2439236	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2439237	0.83[CHB][hapmap]
rs2449040	0.94[CHB][hapmap];0.93[JPT][hapmap]
rs2454673	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2454676	0.84[AFR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2454677	0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2454678	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2454680	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2454682	0.94[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.84[TSI][hapmap];0.86[YRI][hapmap];0.85[ASN][1000 genomes]
rs2454684	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2454685	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.85[ASN][1000 genomes]
rs2454691	0.84[EUR][1000 genomes]
rs2470825	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2470857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2470859	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[ASN][1000 genomes]
rs2470860	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2470861	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2470864	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2470865	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2470867	0.88[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2470869	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.84[TSI][hapmap];0.86[YRI][hapmap];0.93[ASN][1000 genomes]
rs2470879	0.93[ASN][1000 genomes]
rs2470881	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[ASN][1000 genomes]
rs2470885	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.84[EUR][1000 genomes]
rs28802000	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919234	0.87[EUR][1000 genomes]
rs2919236	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34234373	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34558202	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755574	0.88[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.82[TSI][hapmap];0.84[ASN][1000 genomes]
rs3755576	1.00[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3772098	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3772099	1.00[CEU][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3772101	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3772102	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3821359	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4269027	0.83[EUR][1000 genomes]
rs4425200	0.88[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4425201	0.94[ASW][hapmap];1.00[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4426625	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4426626	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4494869	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62278486	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6782630	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6788418	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788689	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6790650	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6804850	0.88[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6808116	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs704585	1.00[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7431448	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7611929	0.92[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7612036	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7612605	0.93[EUR][1000 genomes]
rs7616275	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630800	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs828609	1.00[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844160	0.96[CEU][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9289683	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9289685	0.84[EUR][1000 genomes]
rs9811305	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9811449	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9811860	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9814819	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9815226	0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9820384	0.87[EUR][1000 genomes]
rs9823430	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9835142	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9843214	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9845558	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9852950	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9855175	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9860216	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9866570	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9867586	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9872152	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9873932	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878392	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9881519	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9883516	0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9883537	0.88[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.84[TSI][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs999147	0.88[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[TSI][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390386	chr3:98174549-98579953	Genic enhancers Strong transcription Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1009032	chr3:98514221-98607721	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs6785935	CRYBG3	cis	cerebellum	SCAN
rs6785935	ST3GAL6	Cis_1M	lymphoblastoid	RTeQTL
rs6785935	ZBTB11	cis	cerebellum	SCAN
rs6785935	ST3GAL6	cis	parietal	SCAN

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98484800-98529800	Weak transcription	Primary B cells from cord blood	blood
2	chr3:98503400-98576400	Weak transcription	Gastric	stomach
3	chr3:98504600-98534800	Weak transcription	Small Intestine	intestine
4	chr3:98507800-98529000	Weak transcription	Brain Substantia Nigra	brain
5	chr3:98513600-98536600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr3:98513600-98539200	Weak transcription	Colonic Mucosa	Colon
7	chr3:98513800-98526000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:98515600-98533400	Weak transcription	Fetal Intestine Small	intestine
9	chr3:98516800-98528600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:98516800-98544000	Weak transcription	Spleen	Spleen
11	chr3:98517200-98531400	Weak transcription	Hela-S3	cervix
12	chr3:98520600-98528200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr3:98522400-98533800	Strong transcription	Muscle Satellite Cultured Cells	--
14	chr3:98523400-98531400	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:98523600-98526200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr3:98523600-98526600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr3:98523600-98527000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr3:98523600-98527000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr3:98523600-98527000	Strong transcription	Adipose Nuclei	Adipose
20	chr3:98523600-98527200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr3:98523600-98527400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr3:98523600-98528200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr3:98523600-98528600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr3:98523600-98533800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:98523600-98535200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
26	chr3:98523800-98526000	Strong transcription	NHEK	skin
27	chr3:98523800-98526400	Strong transcription	Aorta	Aorta
28	chr3:98523800-98526400	Strong transcription	Brain Angular Gyrus	brain
29	chr3:98523800-98526400	Strong transcription	Fetal Stomach	stomach
30	chr3:98523800-98526400	Strong transcription	Skeletal Muscle Male	skeletal muscle
31	chr3:98523800-98526600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr3:98523800-98526600	Strong transcription	Brain Cingulate Gyrus	brain
33	chr3:98523800-98526600	Strong transcription	Colon Smooth Muscle	Colon
34	chr3:98523800-98526600	Strong transcription	Fetal Thymus	thymus
35	chr3:98523800-98526600	Strong transcription	HSMMtube	muscle
36	chr3:98523800-98526800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr3:98523800-98526800	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr3:98523800-98526800	Strong transcription	Duodenum Mucosa	Duodenum
39	chr3:98523800-98526800	Strong transcription	A549	lung
40	chr3:98523800-98527000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr3:98523800-98527000	Strong transcription	Liver	Liver
42	chr3:98523800-98527000	Strong transcription	Pancreas	Pancrea
43	chr3:98523800-98527000	Strong transcription	Stomach Smooth Muscle	stomach
44	chr3:98523800-98527000	Strong transcription	K562	blood
45	chr3:98523800-98527200	Strong transcription	Brain Germinal Matrix	brain
46	chr3:98523800-98527200	Strong transcription	Ovary	ovary
47	chr3:98523800-98527400	Strong transcription	Fetal Kidney	kidney
48	chr3:98523800-98528200	Strong transcription	Duodenum Smooth Muscle	Duodenum
49	chr3:98523800-98528200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr3:98523800-98528200	Strong transcription	Fetal Intestine Large	intestine

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