Variant report

Variant	rs1440150
Chromosome Location	chr3:98536571-98536572
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr3:98536374-98536819	A549	lung:	n/a	chr3:98536489-98536508 chr3:98536493-98536502
2	CTCF	chr3:98536275-98536650	A549	lung:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
3	CTCF	chr3:98536480-98536630	GM12878	blood:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
4	CTCF	chr3:98535887-98536925	A549	lung:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
5	ZNF143	chr3:98536366-98536622	K562	blood:	n/a	n/a
6	CTCF	chr3:98536460-98536610	K562	blood:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
7	SMC3	chr3:98535789-98537036	SK-N-SH	brain:	n/a	chr3:98536490-98536504
8	CTCF	chr3:98536191-98536686	K562	blood:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
9	CTCF	chr3:98536322-98536647	A549	lung:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
10	CTCF	chr3:98536271-98536734	GM12878	blood:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
11	RAD21	chr3:98536295-98536881	IMR90	lung:	n/a	chr3:98536489-98536508 chr3:98536493-98536502
12	RAD21	chr3:98536194-98536753	A549	lung:	n/a	chr3:98536489-98536508 chr3:98536493-98536502
13	CTCF	chr3:98536158-98537149	SK-N-SH	brain:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
14	CTCF	chr3:98536560-98536710	HAc	cerebellar:	n/a	n/a
15	SMC3	chr3:98536333-98536764	HepG2	liver:	n/a	chr3:98536490-98536504
16	POLR2A	chr3:98536332-98537028	HCT-116	colon:	n/a	n/a
17	POLR2A	chr3:98536513-98536788	HCT-116	colon:	n/a	n/a
18	CTCF	chr3:98536383-98536598	LNCaP	prostate:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
19	CTCF	chr3:98536440-98536590	GM12868	blood:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
20	CTCF	chr3:98536388-98536576	A549	lung:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
21	JUND	chr3:98536257-98536738	H1-hESC	embryonic stem cell:	n/a	n/a
22	CTCF	chr3:98536392-98536583	GM13977	blood:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
23	CTCF	chr3:98536361-98536614	Pancreas_OC	pancreas:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
24	RAD21	chr3:98536209-98536825	HepG2	liver:	n/a	chr3:98536489-98536508 chr3:98536493-98536502
25	CTCF	chr3:98536264-98536644	T-47D	breast:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
26	RAD21	chr3:98536161-98536964	HCT-116	colon:	n/a	chr3:98536489-98536508 chr3:98536493-98536502
27	RAD21	chr3:98536341-98536785	MCF-7	breast:	n/a	chr3:98536489-98536508 chr3:98536493-98536502
28	CTCF	chr3:98536440-98536590	HBMEC	blood vessel:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
29	EP300	chr3:98536435-98536732	K562	blood:	n/a	n/a
30	RAD21	chr3:98536314-98536833	GM12878	blood:	n/a	chr3:98536489-98536508 chr3:98536493-98536502
31	ARID3A	chr3:98536397-98536679	K562	blood:	n/a	n/a
32	CTCF	chr3:98536440-98536590	GM12870	blood:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
33	TEAD4	chr3:98536415-98536758	K562	blood:	n/a	n/a
34	CTCF	chr3:98536440-98536590	GM12869	blood:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
35	RAD21	chr3:98536312-98536863	SK-N-SH_RA	brain:	n/a	chr3:98536489-98536508 chr3:98536493-98536502
36	CTCF	chr3:98536500-98536650	HFF-Myc	foreskin:	n/a	n/a
37	POLR2A	chr3:98536334-98537074	SK-N-SH	brain:	n/a	n/a
38	CTCF	chr3:98536440-98536590	HFF-Myc	foreskin:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
39	TAL1	chr3:98536480-98536806	K562	blood:	n/a	n/a
40	CTCF	chr3:98536440-98536590	HCT-116	colon:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
41	CTCF	chr3:98536440-98536590	GM12865	blood:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
42	CTCF	chr3:98536364-98536612	Medullo	brain:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
43	CTCF	chr3:98536381-98536583	Hela-S3	cervix:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
44	CTCF	chr3:98536404-98536660	ECC-1	luminal epithelium:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
45	CTCF	chr3:98536440-98536590	NHDF-neo	bronchial:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
46	CTCF	chr3:98536358-98536618	SK-N-SH_RA	brain:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
47	CTCF	chr3:98536212-98536667	MCF-7	breast:	n/a	chr3:98536488-98536506 chr3:98536490-98536511
48	CTCF	chr3:98536560-98536710	WERI-Rb-1	eye:	n/a	n/a
49	E2F4	chr3:98536422-98536665	MCF10A-Er-Src	breast:	n/a	n/a
50	CTCF	chr3:98536480-98536630	RPTEC	kidney:	n/a	chr3:98536488-98536506 chr3:98536490-98536511

Variant related genes	Relation type
DCBLD2	TF binding region

Extended variants
information (count: 130 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs1062196	1.00[ASW][hapmap];0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12054181	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12107050	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12330170	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12490832	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13060012	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs14310	0.88[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1440151	0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1440152	0.88[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1440153	0.97[GIH][hapmap];0.86[TSI][hapmap]
rs17270593	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17270986	0.82[CHD][hapmap]
rs1837500	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1866677	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1866678	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1866679	0.86[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1875086	0.81[ASN][1000 genomes]
rs1967009	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs2028393	0.81[ASN][1000 genomes]
rs2062059	0.88[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap]
rs2119187	0.82[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.92[MKK][hapmap];0.98[TSI][hapmap];0.93[YRI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2119188	1.00[CHB][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.80[YRI][hapmap];0.83[ASN][1000 genomes]
rs2246861	0.94[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs2262597	0.89[ASN][1000 genomes]
rs2279761	0.85[EUR][1000 genomes]
rs2290067	0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs2334230	1.00[CEU][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2439213	0.88[ASN][1000 genomes]
rs2439214	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2439215	0.89[ASN][1000 genomes]
rs2439217	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2439218	0.89[ASN][1000 genomes]
rs2439220	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2439222	0.94[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap];0.81[ASN][1000 genomes]
rs2439223	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[ASN][1000 genomes]
rs2439224	0.82[CHD][hapmap]
rs2439225	0.81[ASN][1000 genomes]
rs2439226	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2439228	0.92[ASN][1000 genomes]
rs2439229	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2439231	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.93[ASN][1000 genomes]
rs2439236	0.94[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs2449040	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs2454673	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2454676	0.83[AFR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2454677	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2454678	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2454680	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2454682	0.88[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.86[YRI][hapmap];0.85[ASN][1000 genomes]
rs2454684	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2454685	0.94[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap];0.85[ASN][1000 genomes]
rs2454691	0.85[EUR][1000 genomes]
rs2470825	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs2470857	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2470859	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.85[ASN][1000 genomes]
rs2470860	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2470861	0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2470864	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2470865	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2470867	0.88[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MEX][hapmap];0.99[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2470869	0.94[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap];0.86[YRI][hapmap];0.93[ASN][1000 genomes]
rs2470879	0.93[ASN][1000 genomes]
rs2470881	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.81[ASN][1000 genomes]
rs2470885	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.85[EUR][1000 genomes]
rs28802000	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2919234	0.87[EUR][1000 genomes]
rs2919236	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34234373	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34558202	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3755574	0.83[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.84[ASN][1000 genomes]
rs3755576	1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3772098	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3772099	1.00[CEU][hapmap];0.84[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3772101	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3772102	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3821359	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4269027	0.82[EUR][1000 genomes]
rs4425200	0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4425201	0.94[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4426625	0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4426626	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4494869	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62278486	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6782630	0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs6785935	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788418	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6788689	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs6790650	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6793760	0.80[EUR][1000 genomes]
rs6804850	0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6808116	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs704585	1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7431448	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.95[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7611929	0.92[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7612036	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7612605	0.93[EUR][1000 genomes]
rs7616275	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7630800	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs828609	1.00[CEU][hapmap];0.83[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs844160	0.96[CEU][hapmap];0.86[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9289683	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9289685	0.85[EUR][1000 genomes]
rs9811305	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9811449	0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9811860	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9814819	0.94[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9815226	0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9820384	0.87[EUR][1000 genomes]
rs9823430	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9835142	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9843214	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs9845558	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9852950	0.94[CHB][hapmap];1.00[JPT][hapmap]
rs9855175	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9860216	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9866570	1.00[CEU][hapmap];0.86[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9867586	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9872152	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9873932	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9878392	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9881519	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9883516	0.83[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9883537	0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.82[TSI][hapmap];0.93[YRI][hapmap];0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs999147	0.83[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3390386	chr3:98174549-98579953	Genic enhancers Strong transcription Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
6	nsv1009032	chr3:98514221-98607721	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1440150	CRYBG3	cis	cerebellum	SCAN
rs1440150	ST3GAL6	cis	parietal	SCAN
rs1440150	ZBTB11	cis	cerebellum	SCAN
rs1440150	ST3GAL6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98503400-98576400	Weak transcription	Gastric	stomach
2	chr3:98513600-98536600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:98513600-98539200	Weak transcription	Colonic Mucosa	Colon
4	chr3:98516800-98544000	Weak transcription	Spleen	Spleen
5	chr3:98523800-98543800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:98524000-98543600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr3:98524200-98544200	Strong transcription	HSMM	muscle
8	chr3:98525600-98552400	Weak transcription	Right Ventricle	heart
9	chr3:98526200-98543200	Weak transcription	Lung	lung
10	chr3:98526400-98538200	Weak transcription	GM12878-XiMat	blood
11	chr3:98526400-98539200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr3:98526400-98539400	Weak transcription	Fetal Brain Male	brain
13	chr3:98526400-98542800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr3:98526400-98544200	Weak transcription	Brain Angular Gyrus	brain
15	chr3:98526400-98545000	Weak transcription	Psoas Muscle	Psoas
16	chr3:98526600-98537400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr3:98526600-98539000	Weak transcription	Colon Smooth Muscle	Colon
18	chr3:98526600-98540000	Weak transcription	Fetal Thymus	thymus
19	chr3:98527000-98536600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr3:98527000-98536600	Weak transcription	K562	blood
21	chr3:98527000-98538600	Weak transcription	Primary T cells from cord blood	blood
22	chr3:98527200-98536600	Weak transcription	Brain Anterior Caudate	brain
23	chr3:98527200-98536600	Weak transcription	Brain Germinal Matrix	brain
24	chr3:98527200-98542200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr3:98527200-98545200	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr3:98527200-98545600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:98528200-98575400	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr3:98528400-98542200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr3:98528600-98543600	Strong transcription	NHEK	skin
30	chr3:98528600-98562000	Weak transcription	Rectal Smooth Muscle	rectum
31	chr3:98529000-98540000	Weak transcription	Brain Hippocampus Middle	brain
32	chr3:98529200-98536600	Weak transcription	Fetal Heart	heart
33	chr3:98529200-98538200	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr3:98529400-98539000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr3:98529400-98546200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:98530400-98537400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr3:98530400-98542000	Weak transcription	Primary hematopoietic stem cells	blood
38	chr3:98530800-98542600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr3:98532400-98541200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
40	chr3:98532400-98546200	Weak transcription	Esophagus	oesophagus
41	chr3:98532600-98537400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr3:98532800-98541800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:98533200-98536600	Strong transcription	Fetal Kidney	kidney
44	chr3:98533200-98536800	Weak transcription	Liver	Liver
45	chr3:98533200-98538600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr3:98533600-98537400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:98534000-98536600	Weak transcription	HSMMtube	muscle
48	chr3:98534000-98545000	Weak transcription	Ovary	ovary
49	chr3:98534000-98552400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr3:98534200-98537200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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