Variant report

Variant	rs4450736
Chromosome Location	chr3:98648107-98648108
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 157 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs1123293	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12054181	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1383902	0.81[AMR][1000 genomes]
rs1383903	0.81[AMR][1000 genomes]
rs1383904	0.80[AMR][1000 genomes]
rs1383905	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1383910	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1481634	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1481635	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1481636	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1481637	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1580376	0.80[AMR][1000 genomes]
rs1585984	0.80[AMR][1000 genomes]
rs1585985	0.80[AMR][1000 genomes]
rs1837500	0.91[ASN][1000 genomes]
rs1875086	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1905015	0.80[AMR][1000 genomes]
rs1905016	0.80[AMR][1000 genomes]
rs1905017	0.80[AMR][1000 genomes]
rs1905018	0.80[AMR][1000 genomes]
rs1905019	0.80[AMR][1000 genomes]
rs1905020	0.80[AMR][1000 genomes]
rs1905021	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1967009	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2028393	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2062059	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2062060	0.80[AMR][1000 genomes]
rs2062061	0.80[AMR][1000 genomes]
rs2119187	0.87[ASN][1000 genomes]
rs2119188	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2128048	0.80[AMR][1000 genomes]
rs2128049	0.80[AMR][1000 genomes]
rs2128051	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2128054	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2246861	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2249740	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2262597	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2262598	0.80[AMR][1000 genomes]
rs2262599	0.81[AMR][1000 genomes]
rs2262603	0.81[AMR][1000 genomes]
rs2439213	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2439214	0.81[ASN][1000 genomes]
rs2439215	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2439217	0.82[ASN][1000 genomes]
rs2439218	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2439220	0.87[ASN][1000 genomes]
rs2439222	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2439223	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2439225	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2439226	0.91[ASN][1000 genomes]
rs2439228	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2439231	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2439236	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2449001	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2449008	0.80[AMR][1000 genomes]
rs2449009	0.80[AMR][1000 genomes]
rs2449011	0.80[AMR][1000 genomes]
rs2449012	0.80[AMR][1000 genomes]
rs2449014	0.80[AMR][1000 genomes]
rs2449016	0.80[AMR][1000 genomes]
rs2449017	0.80[AMR][1000 genomes]
rs2449019	0.80[AMR][1000 genomes]
rs2449020	0.80[AMR][1000 genomes]
rs2449021	0.80[AMR][1000 genomes]
rs2449022	0.80[AMR][1000 genomes]
rs2449023	0.80[AMR][1000 genomes]
rs2449028	0.80[AMR][1000 genomes]
rs2449029	0.81[AMR][1000 genomes]
rs2449030	0.80[AMR][1000 genomes]
rs2449035	0.80[AMR][1000 genomes]
rs2449036	0.80[AMR][1000 genomes]
rs2449038	0.81[AMR][1000 genomes]
rs2449039	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2449040	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2449041	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2449042	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2454673	0.91[ASN][1000 genomes]
rs2454676	0.82[ASN][1000 genomes]
rs2454677	0.83[ASN][1000 genomes]
rs2454678	0.82[ASN][1000 genomes]
rs2454680	0.89[ASN][1000 genomes]
rs2454682	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2454684	0.87[ASN][1000 genomes]
rs2454685	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2454686	0.96[AFR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2454691	0.92[ASN][1000 genomes]
rs2462219	0.80[AMR][1000 genomes]
rs2462220	0.80[AMR][1000 genomes]
rs2462221	0.80[AMR][1000 genomes]
rs2470750	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2470751	0.80[AMR][1000 genomes]
rs2470752	0.81[AMR][1000 genomes]
rs2470753	0.80[AMR][1000 genomes]
rs2470754	0.80[AMR][1000 genomes]
rs2470755	0.80[AMR][1000 genomes]
rs2470756	0.80[AMR][1000 genomes]
rs2470769	0.81[AMR][1000 genomes]
rs2470776	0.80[AMR][1000 genomes]
rs2470785	0.80[AMR][1000 genomes]
rs2470808	0.80[AMR][1000 genomes]
rs2470815	0.80[AMR][1000 genomes]
rs2470816	0.80[AMR][1000 genomes]
rs2470818	0.81[AMR][1000 genomes]
rs2470819	0.80[AMR][1000 genomes]
rs2470821	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470822	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470823	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470824	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470825	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470826	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470829	0.81[AMR][1000 genomes]
rs2470830	0.80[AMR][1000 genomes]
rs2470831	0.81[AMR][1000 genomes]
rs2470833	0.80[AMR][1000 genomes]
rs2470836	0.80[AMR][1000 genomes]
rs2470840	0.80[AMR][1000 genomes]
rs2470842	0.80[AMR][1000 genomes]
rs2470843	0.80[AMR][1000 genomes]
rs2470844	0.80[AMR][1000 genomes]
rs2470845	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2470846	0.81[AMR][1000 genomes]
rs2470849	0.81[AMR][1000 genomes]
rs2470851	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2470854	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2470857	0.87[ASN][1000 genomes]
rs2470859	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2470860	0.87[ASN][1000 genomes]
rs2470861	0.87[ASN][1000 genomes]
rs2470864	0.82[ASN][1000 genomes]
rs2470865	0.81[ASN][1000 genomes]
rs2470869	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470876	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2470879	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470881	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2470885	0.92[ASN][1000 genomes]
rs28608112	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2929489	0.81[AMR][1000 genomes]
rs2929490	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2960190	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs62276887	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6440280	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7630800	0.87[ASN][1000 genomes]
rs7631624	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7648770	0.81[AMR][1000 genomes]
rs9289683	0.91[ASN][1000 genomes]
rs9289685	0.92[ASN][1000 genomes]
rs9821965	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9835142	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9843864	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9849048	0.83[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9852950	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9860264	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4450736	ST3GAL6	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98642800-98648600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:98643000-98663800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:98648000-98649400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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