Variant report

Variant	rs2128054
Chromosome Location	chr3:98664051-98664052
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 279 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:274)

rs_ID	r²[population]
rs1062196	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs1123293	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12054181	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12107050	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12490832	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs1383902	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1383903	0.85[AMR][1000 genomes]
rs1383904	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1383905	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1383910	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs14310	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1440150	0.94[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs1440151	0.83[JPT][hapmap]
rs1440153	0.92[GIH][hapmap]
rs1481634	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481635	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481636	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481637	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1524227	0.82[AMR][1000 genomes]
rs1524228	0.82[AMR][1000 genomes]
rs1524229	0.82[AMR][1000 genomes]
rs1580372	0.82[AMR][1000 genomes]
rs1580374	0.83[AMR][1000 genomes]
rs1580375	0.81[AMR][1000 genomes]
rs1580376	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1585984	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1585985	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1585986	0.82[AMR][1000 genomes]
rs1585988	0.81[AMR][1000 genomes]
rs17270986	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs1837500	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1866677	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1866678	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1875086	0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1905015	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1905016	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1905017	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1905018	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1905019	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1905020	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1905021	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1967009	0.94[CHB][hapmap];0.87[JPT][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2028393	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2062059	0.88[CEU][hapmap];0.94[CHB][hapmap];0.90[CHD][hapmap];0.87[JPT][hapmap];0.90[MEX][hapmap];0.93[TSI][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2062060	0.84[AMR][1000 genomes]
rs2062061	0.84[AMR][1000 genomes]
rs2119187	1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[ASN][1000 genomes]
rs2119188	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.83[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2128048	0.84[AMR][1000 genomes]
rs2128049	0.84[AMR][1000 genomes]
rs2128050	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2128051	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2246861	0.92[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2249740	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2262597	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2262598	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2262599	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2262600	0.81[AMR][1000 genomes]
rs2262602	0.83[AMR][1000 genomes]
rs2262603	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2290067	0.87[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap]
rs2334230	0.92[GIH][hapmap];0.86[JPT][hapmap]
rs2439213	0.81[AMR][1000 genomes]
rs2439218	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2439220	0.82[ASN][1000 genomes]
rs2439222	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2439223	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2439224	0.82[CHB][hapmap];0.82[CHD][hapmap]
rs2439225	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2439226	0.86[ASN][1000 genomes]
rs2439228	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2439231	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2439236	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2439237	0.83[CHB][hapmap]
rs2448988	0.82[AMR][1000 genomes]
rs2448989	0.82[AMR][1000 genomes]
rs2448990	0.82[AMR][1000 genomes]
rs2448991	0.82[AMR][1000 genomes]
rs2448992	0.82[AMR][1000 genomes]
rs2449001	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2449008	0.84[AMR][1000 genomes]
rs2449009	0.84[AMR][1000 genomes]
rs2449011	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449012	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449014	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449016	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449017	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449019	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449020	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449021	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449022	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449023	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449026	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449027	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449028	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449029	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449030	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449031	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449034	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449035	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449036	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2449038	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2449039	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2449040	0.92[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2449041	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2449042	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2449055	0.82[AMR][1000 genomes]
rs2449058	0.83[AMR][1000 genomes]
rs2449061	0.83[AMR][1000 genomes]
rs2449062	0.83[AMR][1000 genomes]
rs2449063	1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs2449064	0.82[AMR][1000 genomes]
rs2449066	0.83[AMR][1000 genomes]
rs2449067	0.82[AMR][1000 genomes]
rs2449070	0.81[AMR][1000 genomes]
rs2454673	1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.86[ASN][1000 genomes]
rs2454680	0.84[ASN][1000 genomes]
rs2454682	0.87[CEU][hapmap];0.94[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2454684	0.82[ASN][1000 genomes]
rs2454685	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2454686	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2454691	0.87[ASN][1000 genomes]
rs2462197	0.82[AMR][1000 genomes]
rs2462198	0.82[AMR][1000 genomes]
rs2462199	0.82[AMR][1000 genomes]
rs2462200	0.82[AMR][1000 genomes]
rs2462219	0.84[AMR][1000 genomes]
rs2462220	0.84[AMR][1000 genomes]
rs2462221	0.84[AMR][1000 genomes]
rs2462222	0.80[AMR][1000 genomes]
rs2462227	0.82[AMR][1000 genomes]
rs2462230	0.83[AMR][1000 genomes]
rs2462231	0.82[AMR][1000 genomes]
rs2462232	0.82[AMR][1000 genomes]
rs2462233	0.82[AMR][1000 genomes]
rs2462234	1.00[JPT][hapmap];0.95[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes]
rs2462235	1.00[JPT][hapmap]
rs2462237	1.00[JPT][hapmap]
rs2462238	0.82[AMR][1000 genomes]
rs2462239	1.00[JPT][hapmap];0.90[MEX][hapmap];0.86[TSI][hapmap];0.82[AMR][1000 genomes]
rs2462240	0.82[AMR][1000 genomes]
rs2462241	0.81[AMR][1000 genomes]
rs2462242	0.82[AMR][1000 genomes]
rs2462244	0.82[AMR][1000 genomes]
rs2470750	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2470751	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470752	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470753	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470754	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2470755	0.84[AMR][1000 genomes]
rs2470756	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470757	0.82[AMR][1000 genomes]
rs2470758	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470759	1.00[JPT][hapmap];0.83[AMR][1000 genomes]
rs2470760	0.82[AMR][1000 genomes]
rs2470761	1.00[JPT][hapmap]
rs2470762	0.83[AMR][1000 genomes]
rs2470764	0.82[AMR][1000 genomes]
rs2470765	0.82[AMR][1000 genomes]
rs2470769	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470774	0.83[AMR][1000 genomes]
rs2470775	0.81[AMR][1000 genomes]
rs2470776	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470777	0.82[AMR][1000 genomes]
rs2470778	0.82[AMR][1000 genomes]
rs2470779	0.83[AMR][1000 genomes]
rs2470780	0.82[AMR][1000 genomes]
rs2470781	0.82[AMR][1000 genomes]
rs2470782	0.82[AMR][1000 genomes]
rs2470783	0.83[AMR][1000 genomes]
rs2470785	0.84[AMR][1000 genomes]
rs2470786	0.81[AMR][1000 genomes]
rs2470787	0.83[AMR][1000 genomes]
rs2470788	0.82[AMR][1000 genomes]
rs2470790	0.83[AMR][1000 genomes]
rs2470793	0.82[AMR][1000 genomes]
rs2470796	0.83[AMR][1000 genomes]
rs2470797	0.83[AMR][1000 genomes]
rs2470798	0.82[AMR][1000 genomes]
rs2470808	0.84[AMR][1000 genomes]
rs2470815	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470816	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470818	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470819	0.84[AMR][1000 genomes]
rs2470821	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470822	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470823	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470824	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470825	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470826	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470829	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470830	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470831	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470833	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470836	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470840	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470842	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470843	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470844	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470845	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2470846	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2470849	0.85[AMR][1000 genomes]
rs2470851	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2470852	0.81[ASN][1000 genomes]
rs2470854	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs2470857	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.82[ASN][1000 genomes]
rs2470859	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2470860	0.82[ASN][1000 genomes]
rs2470861	0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[ASN][1000 genomes]
rs2470867	1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap]
rs2470869	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.83[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.89[YRI][hapmap];0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2470876	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2470879	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2470881	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2470885	1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap];0.80[YRI][hapmap];0.87[ASN][1000 genomes]
rs28608112	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2929489	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2929490	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2949166	0.81[AMR][1000 genomes]
rs2960187	0.81[AMR][1000 genomes]
rs2960190	0.83[EUR][1000 genomes]
rs3755574	0.87[CEU][hapmap];0.88[CHB][hapmap];0.92[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap]
rs3755576	0.88[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs3772099	0.84[JPT][hapmap]
rs3772102	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs3821359	0.86[JPT][hapmap]
rs4241476	0.82[AMR][1000 genomes]
rs4241477	0.82[AMR][1000 genomes]
rs4425200	0.87[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.84[MEX][hapmap];0.81[MKK][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap]
rs4425201	0.88[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs4426625	0.87[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs4426626	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs4450736	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4494869	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs62276887	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440280	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6440349	0.82[AMR][1000 genomes]
rs6782630	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap]
rs6785935	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap]
rs6804850	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs704585	0.88[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs7431448	0.94[GIH][hapmap]
rs7611929	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7612036	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs7630800	0.82[ASN][1000 genomes]
rs7631624	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7633464	0.84[ASN][1000 genomes]
rs7635154	0.80[AMR][1000 genomes]
rs7648770	0.85[AMR][1000 genomes]
rs828609	0.88[CHB][hapmap];0.96[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap]
rs844160	0.86[JPT][hapmap]
rs9289683	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs9289685	0.87[ASN][1000 genomes]
rs951093	0.82[AMR][1000 genomes]
rs9811305	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9811449	0.87[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs9811860	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9814819	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9815226	0.86[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap]
rs9821965	0.90[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs9823430	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9835142	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9843214	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.80[TSI][hapmap]
rs9843864	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9849048	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9852950	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9857396	0.81[AMR][1000 genomes]
rs9860264	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9866570	0.86[JPT][hapmap]
rs9873932	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9876797	0.81[AMR][1000 genomes]
rs9883516	0.82[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs9883537	0.87[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.97[TSI][hapmap]
rs999147	0.87[CEU][hapmap];0.88[CHB][hapmap];0.96[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.97[TSI][hapmap];0.93[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2128054	ST3GAL6	cis	multi-tissue	Pritchard
rs2128054	ZBTB11	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98663200-98667200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr3:98663400-98664800	Enhancers	Osteobl	bone
3	chr3:98663800-98664200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:98663800-98664800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr3:98663800-98664800	Enhancers	HUVEC	blood vessel
6	chr3:98664000-98664400	Enhancers	Fetal Lung	lung
7	chr3:98664000-98664400	Enhancers	NH-A	brain
8	chr3:98664000-98664600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:98664000-98664600	Enhancers	Fetal Brain Female	brain
10	chr3:98664000-98664600	Enhancers	NHEK	skin
11	chr3:98664000-98664800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:98664000-98666200	Enhancers	NHDF-Ad	bronchial
13	chr3:98664000-98666400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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