Variant report

Variant	rs7633464
Chromosome Location	chr3:98715823-98715824
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1062196	0.89[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap]
rs1123293	0.84[ASN][1000 genomes]
rs12054181	0.89[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs13316760	0.85[CHB][hapmap]
rs1383905	0.84[ASN][1000 genomes]
rs1383910	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs1440150	0.83[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap]
rs1481634	0.84[ASN][1000 genomes]
rs1481635	0.84[ASN][1000 genomes]
rs1481636	0.84[ASN][1000 genomes]
rs1481637	0.84[ASN][1000 genomes]
rs1585987	0.83[AMR][1000 genomes]
rs1837500	0.81[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap]
rs1866677	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs1866678	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs1967009	0.83[CHB][hapmap];0.84[ASN][1000 genomes]
rs2062059	1.00[CHB][hapmap];0.93[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.81[MEX][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2119187	0.89[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap]
rs2119188	0.88[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap]
rs2128051	0.84[ASN][1000 genomes]
rs2128054	0.84[ASN][1000 genomes]
rs2246861	0.89[CHB][hapmap];0.86[CHD][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs2249740	0.82[ASN][1000 genomes]
rs2250022	0.80[AMR][1000 genomes]
rs2439222	0.89[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap]
rs2439223	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2439231	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2439236	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs2449001	0.84[ASN][1000 genomes]
rs2449039	0.84[ASN][1000 genomes]
rs2449040	0.88[CHB][hapmap];0.80[JPT][hapmap];0.84[ASN][1000 genomes]
rs2449041	0.84[ASN][1000 genomes]
rs2449042	0.84[ASN][1000 genomes]
rs2449063	0.87[JPT][hapmap]
rs2454673	0.81[CEU][hapmap];0.89[CHB][hapmap];0.81[CHD][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap]
rs2454682	0.83[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap]
rs2454685	0.89[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap]
rs2454686	0.81[ASN][1000 genomes]
rs2462234	0.87[JPT][hapmap]
rs2462235	0.85[JPT][hapmap]
rs2462237	0.87[JPT][hapmap]
rs2462239	0.87[JPT][hapmap]
rs2470750	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2470759	0.87[JPT][hapmap]
rs2470761	0.87[JPT][hapmap];0.81[MEX][hapmap];0.82[YRI][hapmap];0.80[AMR][1000 genomes]
rs2470821	0.84[ASN][1000 genomes]
rs2470822	0.84[ASN][1000 genomes]
rs2470823	0.84[ASN][1000 genomes]
rs2470824	0.84[ASN][1000 genomes]
rs2470825	0.89[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs2470826	0.84[ASN][1000 genomes]
rs2470845	0.81[ASN][1000 genomes]
rs2470851	0.84[ASN][1000 genomes]
rs2470854	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2470857	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2470859	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2470861	0.82[CHB][hapmap];0.84[JPT][hapmap];0.84[YRI][hapmap]
rs2470867	0.89[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap]
rs2470869	0.89[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap]
rs2470876	0.84[ASN][1000 genomes]
rs2470881	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs2470885	0.81[CEU][hapmap];0.89[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.90[YRI][hapmap]
rs278379	0.85[CHB][hapmap]
rs28608112	0.82[ASN][1000 genomes]
rs62276887	0.84[ASN][1000 genomes]
rs6440280	0.84[ASN][1000 genomes]
rs6774875	0.85[CHB][hapmap]
rs6785935	0.89[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap]
rs7615628	0.85[CHB][hapmap]
rs7615856	0.85[CHB][hapmap]
rs7631624	0.84[ASN][1000 genomes]
rs828614	0.85[CHB][hapmap]
rs828617	0.85[CHB][hapmap]
rs828621	0.85[CHB][hapmap]
rs9289683	0.89[CHB][hapmap];0.87[JPT][hapmap];0.82[YRI][hapmap]
rs955351	0.85[CHB][hapmap]
rs9811860	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs9814819	0.89[CHB][hapmap];0.87[JPT][hapmap]
rs9821965	0.81[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9823430	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs9835142	0.89[CHB][hapmap];0.87[JPT][hapmap];0.84[ASN][1000 genomes]
rs9843214	0.89[CHB][hapmap];0.82[CHD][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap]
rs9843864	0.83[ASN][1000 genomes]
rs9852950	0.88[CHB][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs9873932	0.89[CHB][hapmap];0.87[JPT][hapmap];0.86[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv591065	chr3:98204198-98766326	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1007140	chr3:98421229-99202458	Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv536663	chr3:98421229-99202458	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv877214	chr3:98445324-98738006	Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1007486	chr3:98597738-99249081	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv980100	chr3:98714787-98766962	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:98705600-98716400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:98711000-98721200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:98712800-98723000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr3:98713200-98721000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:98713800-98716400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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