Variant report
Variant | rs1585987 |
---|---|
Chromosome Location | chr3:98735428-98735429 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs12054181 | 1.00[JPT][hapmap] |
rs1383902 | 0.98[ASN][1000 genomes] |
rs1383903 | 0.92[ASN][1000 genomes] |
rs1383904 | 0.98[ASN][1000 genomes] |
rs1440150 | 1.00[JPT][hapmap] |
rs1524227 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs1524228 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs1524229 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs1580372 | 0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs1580374 | 0.92[ASN][1000 genomes] |
rs1580375 | 0.91[ASN][1000 genomes] |
rs1580376 | 0.96[ASN][1000 genomes] |
rs1585984 | 0.98[ASN][1000 genomes] |
rs1585985 | 0.98[ASN][1000 genomes] |
rs1585986 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs1585988 | 0.98[ASN][1000 genomes] |
rs1837500 | 1.00[JPT][hapmap] |
rs1905015 | 0.98[ASN][1000 genomes] |
rs1905016 | 0.98[ASN][1000 genomes] |
rs1905017 | 0.98[ASN][1000 genomes] |
rs1905018 | 0.96[ASN][1000 genomes] |
rs1905019 | 0.96[ASN][1000 genomes] |
rs1905020 | 0.96[ASN][1000 genomes] |
rs1905021 | 0.96[ASN][1000 genomes] |
rs1967009 | 0.86[JPT][hapmap] |
rs2062059 | 0.87[JPT][hapmap] |
rs2062060 | 0.98[ASN][1000 genomes] |
rs2062061 | 0.98[ASN][1000 genomes] |
rs2119187 | 1.00[JPT][hapmap] |
rs2119188 | 1.00[JPT][hapmap] |
rs2128048 | 0.98[ASN][1000 genomes] |
rs2128049 | 0.98[ASN][1000 genomes] |
rs2128050 | 0.96[ASN][1000 genomes] |
rs2200034 | 0.84[ASN][1000 genomes] |
rs2200035 | 0.81[ASN][1000 genomes] |
rs2200036 | 0.90[ASN][1000 genomes] |
rs2246861 | 1.00[JPT][hapmap];0.81[YRI][hapmap] |
rs2250022 | 0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2262598 | 0.96[ASN][1000 genomes] |
rs2262599 | 0.95[ASN][1000 genomes] |
rs2262600 | 0.86[ASN][1000 genomes] |
rs2262601 | 0.80[ASN][1000 genomes] |
rs2262602 | 0.92[ASN][1000 genomes] |
rs2262603 | 0.96[ASN][1000 genomes] |
rs2439222 | 1.00[JPT][hapmap] |
rs2439223 | 1.00[JPT][hapmap] |
rs2439231 | 1.00[JPT][hapmap] |
rs2439236 | 1.00[JPT][hapmap] |
rs2448984 | 0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2448988 | 0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs2448989 | 0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs2448990 | 0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs2448991 | 0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs2448992 | 0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs2449006 | 0.87[ASN][1000 genomes] |
rs2449007 | 0.87[ASN][1000 genomes] |
rs2449008 | 0.96[ASN][1000 genomes] |
rs2449009 | 0.98[ASN][1000 genomes] |
rs2449011 | 0.98[ASN][1000 genomes] |
rs2449012 | 0.98[ASN][1000 genomes] |
rs2449014 | 0.96[ASN][1000 genomes] |
rs2449016 | 0.96[ASN][1000 genomes] |
rs2449017 | 0.96[ASN][1000 genomes] |
rs2449019 | 0.96[ASN][1000 genomes] |
rs2449020 | 0.96[ASN][1000 genomes] |
rs2449021 | 0.86[ASN][1000 genomes] |
rs2449022 | 0.96[ASN][1000 genomes] |
rs2449023 | 0.96[ASN][1000 genomes] |
rs2449026 | 0.96[ASN][1000 genomes] |
rs2449027 | 0.96[ASN][1000 genomes] |
rs2449028 | 0.96[ASN][1000 genomes] |
rs2449029 | 0.96[ASN][1000 genomes] |
rs2449030 | 0.96[ASN][1000 genomes] |
rs2449031 | 0.95[ASN][1000 genomes] |
rs2449034 | 0.96[ASN][1000 genomes] |
rs2449035 | 0.96[ASN][1000 genomes] |
rs2449036 | 0.96[ASN][1000 genomes] |
rs2449038 | 0.96[ASN][1000 genomes] |
rs2449040 | 0.92[JPT][hapmap] |
rs2449055 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2449058 | 0.98[ASN][1000 genomes] |
rs2449059 | 0.81[ASN][1000 genomes] |
rs2449061 | 0.98[ASN][1000 genomes] |
rs2449062 | 0.98[ASN][1000 genomes] |
rs2449063 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2449064 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2449065 | 0.99[ASN][1000 genomes] |
rs2449066 | 1.00[ASN][1000 genomes] |
rs2449067 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2449070 | 0.98[ASN][1000 genomes] |
rs2454673 | 1.00[JPT][hapmap] |
rs2454682 | 0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap] |
rs2454685 | 1.00[JPT][hapmap] |
rs2462197 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2462198 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2462199 | 0.81[AMR][1000 genomes];0.97[ASN][1000 genomes] |
rs2462200 | 0.81[AMR][1000 genomes];0.91[ASN][1000 genomes] |
rs2462211 | 0.87[ASN][1000 genomes] |
rs2462212 | 0.87[ASN][1000 genomes] |
rs2462219 | 0.98[ASN][1000 genomes] |
rs2462220 | 0.98[ASN][1000 genomes] |
rs2462221 | 0.98[ASN][1000 genomes] |
rs2462222 | 0.92[ASN][1000 genomes] |
rs2462223 | 1.00[ASN][1000 genomes] |
rs2462224 | 1.00[ASN][1000 genomes] |
rs2462225 | 1.00[ASN][1000 genomes] |
rs2462226 | 1.00[ASN][1000 genomes] |
rs2462227 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2462230 | 1.00[ASN][1000 genomes] |
rs2462231 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2462232 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2462233 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2462234 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs2462235 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes] |
rs2462236 | 0.99[ASN][1000 genomes] |
rs2462237 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.99[ASN][1000 genomes] |
rs2462238 | 0.81[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rs2462239 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2462240 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2462241 | 0.98[ASN][1000 genomes] |
rs2462242 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2462244 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2470751 | 0.98[ASN][1000 genomes] |
rs2470752 | 0.97[ASN][1000 genomes] |
rs2470753 | 0.98[ASN][1000 genomes] |
rs2470754 | 0.96[ASN][1000 genomes] |
rs2470755 | 0.98[ASN][1000 genomes] |
rs2470756 | 0.96[ASN][1000 genomes] |
rs2470757 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2470758 | 0.96[ASN][1000 genomes] |
rs2470759 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.98[ASN][1000 genomes] |
rs2470760 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2470761 | 0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2470762 | 0.98[ASN][1000 genomes] |
rs2470764 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2470765 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2470769 | 0.96[ASN][1000 genomes] |
rs2470774 | 0.98[ASN][1000 genomes] |
rs2470775 | 0.98[ASN][1000 genomes] |
rs2470776 | 0.96[ASN][1000 genomes] |
rs2470777 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2470778 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2470779 | 0.98[ASN][1000 genomes] |
rs2470780 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2470781 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2470782 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2470783 | 0.94[ASN][1000 genomes] |
rs2470784 | 0.89[ASN][1000 genomes] |
rs2470785 | 0.96[ASN][1000 genomes] |
rs2470786 | 0.97[ASN][1000 genomes] |
rs2470787 | 0.98[ASN][1000 genomes] |
rs2470788 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs2470790 | 0.98[ASN][1000 genomes] |
rs2470793 | 0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs2470796 | 0.91[ASN][1000 genomes] |
rs2470797 | 0.92[ASN][1000 genomes] |
rs2470798 | 0.81[AMR][1000 genomes];0.92[ASN][1000 genomes] |
rs2470799 | 0.82[ASN][1000 genomes] |
rs2470808 | 0.96[ASN][1000 genomes] |
rs2470815 | 0.96[ASN][1000 genomes] |
rs2470816 | 0.96[ASN][1000 genomes] |
rs2470818 | 0.96[ASN][1000 genomes] |
rs2470819 | 0.96[ASN][1000 genomes] |
rs2470825 | 1.00[JPT][hapmap] |
rs2470829 | 0.98[ASN][1000 genomes] |
rs2470830 | 0.98[ASN][1000 genomes] |
rs2470831 | 0.98[ASN][1000 genomes] |
rs2470832 | 0.90[ASN][1000 genomes] |
rs2470833 | 0.98[ASN][1000 genomes] |
rs2470836 | 0.96[ASN][1000 genomes] |
rs2470840 | 0.96[ASN][1000 genomes] |
rs2470842 | 0.96[ASN][1000 genomes] |
rs2470843 | 0.98[ASN][1000 genomes] |
rs2470844 | 0.98[ASN][1000 genomes] |
rs2470846 | 0.98[ASN][1000 genomes] |
rs2470849 | 0.98[ASN][1000 genomes] |
rs2470857 | 1.00[JPT][hapmap] |
rs2470859 | 1.00[JPT][hapmap] |
rs2470861 | 1.00[JPT][hapmap] |
rs2470867 | 1.00[JPT][hapmap] |
rs2470869 | 1.00[JPT][hapmap];0.81[YRI][hapmap] |
rs2470881 | 1.00[JPT][hapmap] |
rs2470885 | 1.00[JPT][hapmap] |
rs2929489 | 0.96[ASN][1000 genomes] |
rs2929490 | 0.96[ASN][1000 genomes] |
rs2949166 | 0.98[ASN][1000 genomes] |
rs2960187 | 0.92[ASN][1000 genomes] |
rs35086114 | 0.87[ASN][1000 genomes] |
rs4241476 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs4241477 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs6440349 | 0.81[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rs7614771 | 0.81[ASN][1000 genomes] |
rs7633464 | 0.83[AMR][1000 genomes] |
rs7635154 | 0.94[ASN][1000 genomes] |
rs7648770 | 1.00[ASN][1000 genomes] |
rs7651315 | 0.80[ASN][1000 genomes] |
rs9289683 | 1.00[JPT][hapmap] |
rs951093 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rs9823430 | 1.00[JPT][hapmap] |
rs9835142 | 1.00[JPT][hapmap];0.82[YRI][hapmap] |
rs9843214 | 1.00[JPT][hapmap] |
rs9852950 | 0.83[CHB][hapmap];1.00[JPT][hapmap] |
rs9857396 | 0.91[ASN][1000 genomes] |
rs9873932 | 1.00[JPT][hapmap] |
rs9876797 | 0.91[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv591065 | chr3:98204198-98766326 | Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
2 | nsv1007140 | chr3:98421229-99202458 | Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
3 | nsv536663 | chr3:98421229-99202458 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 17 gene(s) | inside rSNPs | diseases |
4 | nsv877214 | chr3:98445324-98738006 | Enhancers Genic enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 14 gene(s) | inside rSNPs | diseases |
5 | nsv1007486 | chr3:98597738-99249081 | Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
6 | nsv980100 | chr3:98714787-98766962 | Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
7 | esv18056 | chr3:98726549-98736401 | Weak transcription Enhancers Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:98726600-98740400 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |