Variant report

Variant rs2517680
Chromosome Location chr6:29932688-29932689
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:116 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:29916800-29933000 Weak transcription Esophagus oesophagus
2 chr6:29916800-29933000 Weak transcription Pancreas Pancrea
3 chr6:29916800-29933200 Weak transcription Lung lung
4 chr6:29916800-29940200 Weak transcription Gastric stomach
5 chr6:29924800-29933000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr6:29927800-29938800 Weak transcription Spleen Spleen
7 chr6:29931800-29932800 Enhancers Primary monocytes fromperipheralblood blood
8 chr6:29931800-29932800 Enhancers Primary T helper cells fromperipheralblood blood
9 chr6:29932000-29932800 Enhancers Primary T helper memory cells from peripheral blood 2 blood
10 chr6:29932000-29932800 Enhancers NHDF-Ad bronchial
11 chr6:29932000-29934200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
12 chr6:29932200-29932800 Flanking Active TSS HUES64 Cell Line embryonic stem cell
13 chr6:29932200-29932800 Enhancers Breast Myoepithelial Primary Cells Breast
14 chr6:29932200-29932800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
15 chr6:29932200-29932800 Enhancers Primary T cells fromperipheralblood blood
16 chr6:29932200-29932800 Enhancers Primary T helper 17 cells PMA-I stimulated --
17 chr6:29932200-29932800 Flanking Active TSS Primary T regulatory cells fromperipheralblood blood
18 chr6:29932200-29932800 Enhancers Primary Natural Killer cells fromperipheralblood blood
19 chr6:29932200-29932800 Enhancers Brain Inferior Temporal Lobe brain
20 chr6:29932200-29932800 Enhancers Colonic Mucosa Colon
21 chr6:29932200-29932800 Enhancers Fetal Heart heart
22 chr6:29932200-29932800 Enhancers Fetal Intestine Large intestine
23 chr6:29932200-29932800 Enhancers Fetal Muscle Leg muscle
24 chr6:29932200-29932800 Enhancers Rectal Mucosa Donor 31 rectum
25 chr6:29932200-29932800 Enhancers Stomach Mucosa stomach
26 chr6:29932200-29932800 Enhancers NH-A brain
27 chr6:29932200-29933000 Enhancers Primary mononuclear cells fromperipheralblood Blood
28 chr6:29932200-29933000 Enhancers Fetal Stomach stomach
29 chr6:29932200-29933000 Enhancers Small Intestine intestine
30 chr6:29932200-29933200 Enhancers Brain Angular Gyrus brain
31 chr6:29932200-29933200 Flanking Active TSS Hela-S3 cervix
32 chr6:29932200-29933400 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
33 chr6:29932200-29933800 Flanking Active TSS Brain Cingulate Gyrus brain
34 chr6:29932200-29934000 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr6:29932200-29934000 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
36 chr6:29932200-29934000 Enhancers Brain Germinal Matrix brain
37 chr6:29932200-29934200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
38 chr6:29932200-29934200 Flanking Active TSS Primary neutrophils fromperipheralblood blood
39 chr6:29932200-29934200 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
40 chr6:29932200-29934200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
41 chr6:29932200-29934200 Flanking Active TSS Adipose Nuclei Adipose
42 chr6:29932200-29934200 Flanking Active TSS Colon Smooth Muscle Colon
43 chr6:29932200-29934200 Flanking Active TSS HMEC breast
44 chr6:29932200-29934400 Flanking Active TSS HUES48 Cell Line embryonic stem cell
45 chr6:29932200-29934400 Flanking Active TSS Primary B cells from cord blood blood
46 chr6:29932200-29934600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
47 chr6:29932200-29934600 Flanking Active TSS Muscle Satellite Cultured Cells --
48 chr6:29932200-29934600 Flanking Active TSS Skeletal Muscle Male skeletal muscle
49 chr6:29932200-29934600 Flanking Active TSS Dnd41 blood
50 chr6:29932200-29934800 Flanking Active TSS HUES6 Cell Line embryonic stem cell

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