Variant report

Variant rs2571404
Chromosome Location chr6:29932862-29932863
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:119 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr6:29916800-29933000 Weak transcription Esophagus oesophagus
2 chr6:29916800-29933000 Weak transcription Pancreas Pancrea
3 chr6:29916800-29933200 Weak transcription Lung lung
4 chr6:29916800-29940200 Weak transcription Gastric stomach
5 chr6:29924800-29933000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
6 chr6:29927800-29938800 Weak transcription Spleen Spleen
7 chr6:29932000-29934200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
8 chr6:29932200-29933000 Enhancers Primary mononuclear cells fromperipheralblood Blood
9 chr6:29932200-29933000 Enhancers Fetal Stomach stomach
10 chr6:29932200-29933000 Enhancers Small Intestine intestine
11 chr6:29932200-29933200 Enhancers Brain Angular Gyrus brain
12 chr6:29932200-29933200 Flanking Active TSS Hela-S3 cervix
13 chr6:29932200-29933400 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
14 chr6:29932200-29933800 Flanking Active TSS Brain Cingulate Gyrus brain
15 chr6:29932200-29934000 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
16 chr6:29932200-29934000 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
17 chr6:29932200-29934000 Enhancers Brain Germinal Matrix brain
18 chr6:29932200-29934200 Enhancers hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
19 chr6:29932200-29934200 Flanking Active TSS Primary neutrophils fromperipheralblood blood
20 chr6:29932200-29934200 Flanking Active TSS Primary hematopoietic stem cells short term culture blood
21 chr6:29932200-29934200 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
22 chr6:29932200-29934200 Flanking Active TSS Adipose Nuclei Adipose
23 chr6:29932200-29934200 Flanking Active TSS Colon Smooth Muscle Colon
24 chr6:29932200-29934200 Flanking Active TSS HMEC breast
25 chr6:29932200-29934400 Flanking Active TSS HUES48 Cell Line embryonic stem cell
26 chr6:29932200-29934400 Flanking Active TSS Primary B cells from cord blood blood
27 chr6:29932200-29934600 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr6:29932200-29934600 Flanking Active TSS Muscle Satellite Cultured Cells --
29 chr6:29932200-29934600 Flanking Active TSS Skeletal Muscle Male skeletal muscle
30 chr6:29932200-29934600 Flanking Active TSS Dnd41 blood
31 chr6:29932200-29934800 Flanking Active TSS HUES6 Cell Line embryonic stem cell
32 chr6:29932200-29934800 Enhancers ES-UCSF4 Cell Line embryonic stem cell
33 chr6:29932200-29934800 Enhancers Primary B cells from peripheral blood blood
34 chr6:29932200-29934800 Flanking Active TSS Monocytes-CD14+_RO01746 blood
35 chr6:29932200-29935600 Enhancers Fetal Lung lung
36 chr6:29932200-29936200 Enhancers Fetal Intestine Small intestine
37 chr6:29932400-29933000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
38 chr6:29932400-29933000 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
39 chr6:29932400-29933000 Active TSS Right Atrium heart
40 chr6:29932400-29933200 Active TSS Sigmoid Colon Sigmoid Colon
41 chr6:29932400-29933400 Flanking Active TSS Primary T killer naive cells fromperipheralblood blood
42 chr6:29932400-29933600 Active TSS Psoas Muscle Psoas
43 chr6:29932400-29934000 Flanking Active TSS Primary T cells from cord blood blood
44 chr6:29932400-29934000 Flanking Active TSS Ganglion Eminence derived primary cultured neurospheres brain
45 chr6:29932400-29934000 Active TSS Left Ventricle heart
46 chr6:29932400-29934200 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
47 chr6:29932400-29934200 Flanking Active TSS Brain Hippocampus Middle brain
48 chr6:29932400-29934200 Flanking Active TSS HUVEC blood vessel
49 chr6:29932400-29934200 Flanking Active TSS NHEK skin
50 chr6:29932400-29934400 Flanking Active TSS hESC Derived CD184+ Endoderm Cultured Cells ES cell derived

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