Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HNF4A	chr1:165466681-165466895	HepG2	liver:	n/a	chr1:165466796-165466811 chr1:165466798-165466810 chr1:165466796-165466811 chr1:165466796-165466811
2	SP1	chr1:165466589-165466982	HepG2	liver:	n/a	n/a
3	HNF4A	chr1:165466699-165466975	HepG2	liver:	n/a	chr1:165466796-165466811 chr1:165466798-165466810 chr1:165466796-165466811 chr1:165466796-165466811

Variant related genes	Relation type
ENSG00000230748	TF binding region

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1425747	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1913839	0.84[AMR][1000 genomes]
rs206235	0.87[AMR][1000 genomes]
rs2104513	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2459239	0.87[AMR][1000 genomes]
rs2478259	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2478265	0.84[AMR][1000 genomes]
rs2485406	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2766085	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs285455	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs285457	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs285458	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs285472	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs285498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35865999	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs3856210	0.84[AMR][1000 genomes]
rs398071	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs407380	0.82[AMR][1000 genomes]
rs417326	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs417973	0.84[AMR][1000 genomes]
rs425833	0.84[AMR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165464600-165467400	Enhancers	Fetal Muscle Leg	muscle
2	chr1:165464800-165470200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr1:165464800-165470600	Weak transcription	Psoas Muscle	Psoas
4	chr1:165466600-165470600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr1:165466800-165467000	Enhancers	Right Atrium	heart
6	chr1:165466800-165467200	Flanking Active TSS	HepG2	liver
7	chr1:165466800-165467600	Enhancers	Fetal Muscle Trunk	muscle
8	chr1:165466800-165479600	Weak transcription	Fetal Heart	heart

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