Variant report

Variant	rs285457
Chromosome Location	chr1:165494689-165494690
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1425747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1913839	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs206235	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2104513	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2459239	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2478259	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2478265	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2485402	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2485406	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2553640	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2766085	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs285455	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs285458	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs285472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs285498	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs35865999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3856210	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs398071	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs407380	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs417326	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs417973	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs425833	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165493200-165496600	Enhancers	HepG2	liver
2	chr1:165493400-165495200	Enhancers	Brain Hippocampus Middle	brain
3	chr1:165493800-165495000	Enhancers	Brain Substantia Nigra	brain
4	chr1:165494000-165495200	Enhancers	Fetal Muscle Leg	muscle
5	chr1:165494000-165495400	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr1:165494200-165494800	Enhancers	Fetal Heart	heart
7	chr1:165494400-165495000	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr1:165494400-165495200	Enhancers	iPS-18 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links