Variant report

Variant	rs417973
Chromosome Location	chr1:165536034-165536035
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10918220	1.00[ASN][1000 genomes]
rs1425747	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1913839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs206235	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104513	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2459239	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2478259	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2478265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485402	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485406	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2553640	0.84[AMR][1000 genomes]
rs2766085	0.84[AMR][1000 genomes]
rs285455	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs285457	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs285458	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs285472	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs285498	0.84[AMR][1000 genomes]
rs35865999	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3856210	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs398071	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs407380	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147147	1.00[ASN][1000 genomes]
rs4147148	1.00[ASN][1000 genomes]
rs417326	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs425833	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658200	1.00[ASN][1000 genomes]
rs6677016	1.00[ASN][1000 genomes]
rs6679939	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165534400-165539400	Weak transcription	Fetal Muscle Leg	muscle

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