Variant report

Variant	rs6658200
Chromosome Location	chr1:165570067-165570068
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:165565977..165568416-chr1:165569546..165571899,2	K562	blood:
2	chr1:165569088..165572600-chr1:165598003..165601699,3	K562	blood:
3	chr1:165569692..165572245-chr1:165736970..165738543,2	K562	blood:
4	chr1:165567791..165570618-chr1:165797003..165798586,2	K562	blood:
5	chr1:165568647..165571505-chr1:165795399..165798198,2	MCF-7	breast:
6	chr1:165569014..165571063-chr1:165883495..165885234,2	K562	blood:

Variant related genes	Relation type
ENSG00000224358	Chromatin interaction
ENSG00000143183	Chromatin interaction
ENSG00000143179	Chromatin interaction
ENSG00000236206	Chromatin interaction
ENSG00000143198	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10918220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1538114	0.81[EUR][1000 genomes]
rs1913839	1.00[ASN][1000 genomes]
rs206235	1.00[ASN][1000 genomes]
rs2459239	1.00[ASN][1000 genomes]
rs2478265	1.00[ASN][1000 genomes]
rs2485402	1.00[ASN][1000 genomes]
rs3856210	1.00[ASN][1000 genomes]
rs407380	1.00[ASN][1000 genomes]
rs4147147	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147148	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs417973	1.00[ASN][1000 genomes]
rs425833	1.00[ASN][1000 genomes]
rs6657788	0.86[AMR][1000 genomes]
rs6672933	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6677016	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6679939	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7537290	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs952375	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429902	chr1:165531342-165574342	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165568000-165572800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:165568000-165574800	Weak transcription	Right Atrium	heart
3	chr1:165568200-165570200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr1:165568200-165570200	Weak transcription	Placenta	Placenta
5	chr1:165568200-165570400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr1:165568200-165570600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr1:165568200-165570600	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr1:165568200-165570600	Weak transcription	Brain Hippocampus Middle	brain
9	chr1:165568200-165570600	Weak transcription	Stomach Mucosa	stomach
10	chr1:165568200-165570800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr1:165568200-165570800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:165568200-165570800	Weak transcription	Primary B cells from peripheral blood	blood
13	chr1:165568200-165570800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr1:165568200-165570800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr1:165568200-165570800	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr1:165568200-165570800	Weak transcription	Brain Substantia Nigra	brain
17	chr1:165568200-165570800	Weak transcription	Colon Smooth Muscle	Colon
18	chr1:165568200-165570800	Weak transcription	Fetal Heart	heart
19	chr1:165568200-165570800	Weak transcription	Fetal Intestine Small	intestine
20	chr1:165568200-165571000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr1:165568200-165571000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr1:165568200-165571000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr1:165568200-165571000	Enhancers	HepG2	liver
24	chr1:165568200-165579600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr1:165568400-165570800	Weak transcription	Adipose Nuclei	Adipose
26	chr1:165568400-165570800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr1:165568400-165570800	Weak transcription	A549	lung
28	chr1:165568400-165570800	Weak transcription	Hela-S3	cervix
29	chr1:165568600-165570800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr1:165568600-165570800	Weak transcription	Brain Anterior Caudate	brain
31	chr1:165568600-165570800	Weak transcription	GM12878-XiMat	blood
32	chr1:165568600-165571000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr1:165568600-165571000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr1:165568600-165571000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:165568800-165570800	Weak transcription	HUES48 Cell Line	embryonic stem cell
36	chr1:165568800-165570800	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr1:165569000-165571000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr1:165569000-165571200	Weak transcription	Osteobl	bone
39	chr1:165569600-165571000	Enhancers	Liver	Liver
40	chr1:165569800-165570800	Enhancers	Skeletal Muscle Male	skeletal muscle
41	chr1:165569800-165571200	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr1:165569800-165571400	Enhancers	Primary monocytes fromperipheralblood	blood
43	chr1:165569800-165571400	Enhancers	Duodenum Mucosa	Duodenum
44	chr1:165570000-165570200	Enhancers	Rectal Mucosa Donor 29	rectum
45	chr1:165570000-165570800	Enhancers	K562	blood

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