Variant report

Variant	rs2459239
Chromosome Location	chr1:165530078-165530079
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10918220	1.00[ASN][1000 genomes]
rs1425747	0.97[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1913839	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs206235	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2104513	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2478259	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2478265	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485402	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2485406	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2553640	0.87[AMR][1000 genomes]
rs2766085	0.87[AMR][1000 genomes]
rs285455	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs285457	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs285458	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs285472	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs285498	0.87[AMR][1000 genomes]
rs35865999	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3856210	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs398071	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs407380	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4147147	1.00[ASN][1000 genomes]
rs4147148	1.00[ASN][1000 genomes]
rs417326	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs417973	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs425833	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6658200	1.00[ASN][1000 genomes]
rs6677016	1.00[ASN][1000 genomes]
rs6679939	1.00[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165529200-165530600	Enhancers	Brain Germinal Matrix	brain
2	chr1:165529200-165530800	Enhancers	Left Ventricle	heart
3	chr1:165529600-165531200	Enhancers	Fetal Lung	lung
4	chr1:165529600-165531400	Enhancers	Fetal Heart	heart
5	chr1:165529800-165530200	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
6	chr1:165529800-165530200	Enhancers	Gastric	stomach
7	chr1:165529800-165530400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
8	chr1:165529800-165530400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr1:165529800-165530400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
10	chr1:165529800-165530600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
11	chr1:165529800-165530800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr1:165529800-165530800	Bivalent Enhancer	Fetal Stomach	stomach
13	chr1:165529800-165530800	Enhancers	Right Atrium	heart
14	chr1:165529800-165531000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
15	chr1:165529800-165531000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr1:165529800-165531000	Enhancers	Brain Anterior Caudate	brain
17	chr1:165529800-165531200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr1:165529800-165531200	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
19	chr1:165529800-165531200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr1:165529800-165531200	Enhancers	Right Ventricle	heart
21	chr1:165530000-165530200	Enhancers	Brain Substantia Nigra	brain
22	chr1:165530000-165530200	Flanking Active TSS	Duodenum Mucosa	Duodenum
23	chr1:165530000-165530200	Enhancers	Fetal Muscle Leg	muscle
24	chr1:165530000-165530400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:165530000-165530600	Enhancers	H1 Cell Line	embryonic stem cell
26	chr1:165530000-165530600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
27	chr1:165530000-165530800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr1:165530000-165531000	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr1:165530000-165531000	Enhancers	Fetal Brain Male	brain
30	chr1:165530000-165531200	Enhancers	Ovary	ovary

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