Variant report

Variant	rs2583645
Chromosome Location	chr10:19502547-19502548
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10740849	0.95[ASN][1000 genomes]
rs10740850	0.95[ASN][1000 genomes]
rs10763874	0.84[ASN][1000 genomes]
rs10763880	0.93[ASN][1000 genomes]
rs10763881	0.95[ASN][1000 genomes]
rs10827012	0.94[ASN][1000 genomes]
rs10827019	0.94[ASN][1000 genomes]
rs10827029	0.86[ASN][1000 genomes]
rs10827030	0.87[ASN][1000 genomes]
rs10827031	0.87[ASN][1000 genomes]
rs10827032	0.88[ASN][1000 genomes]
rs10827034	0.95[ASN][1000 genomes]
rs10827035	0.96[ASN][1000 genomes]
rs10827061	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11008821	0.93[ASN][1000 genomes]
rs11008832	0.91[ASN][1000 genomes]
rs11008838	0.95[ASN][1000 genomes]
rs11008861	0.96[ASN][1000 genomes]
rs11008871	0.96[ASN][1000 genomes]
rs12245697	0.93[ASN][1000 genomes]
rs12245761	0.93[ASN][1000 genomes]
rs12247241	0.93[ASN][1000 genomes]
rs12247413	0.93[ASN][1000 genomes]
rs12250261	0.86[ASN][1000 genomes]
rs12250525	0.93[ASN][1000 genomes]
rs12252395	0.93[ASN][1000 genomes]
rs12257317	0.86[ASN][1000 genomes]
rs12267424	0.93[ASN][1000 genomes]
rs12570472	0.86[ASN][1000 genomes]
rs12570966	0.86[ASN][1000 genomes]
rs12573164	0.94[ASN][1000 genomes]
rs12761014	0.88[ASN][1000 genomes]
rs12783745	0.85[ASN][1000 genomes]
rs2358341	0.86[ASN][1000 genomes]
rs2583650	0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2782328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28599581	0.94[ASN][1000 genomes]
rs2884432	0.88[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs34129683	0.84[ASN][1000 genomes]
rs34398776	0.86[ASN][1000 genomes]
rs34724539	0.94[ASN][1000 genomes]
rs36013652	0.86[ASN][1000 genomes]
rs4278424	0.89[ASN][1000 genomes]
rs4306210	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4748559	0.94[ASN][1000 genomes]
rs4748560	0.95[ASN][1000 genomes]
rs4748562	0.96[ASN][1000 genomes]
rs7070317	0.94[ASN][1000 genomes]
rs7070471	0.87[AFR][1000 genomes]
rs7077017	0.96[ASN][1000 genomes]
rs7081309	0.84[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs7087003	0.95[ASN][1000 genomes]
rs7087777	0.95[ASN][1000 genomes]
rs7091387	0.99[ASN][1000 genomes]
rs7094873	0.96[ASN][1000 genomes]
rs7896771	0.88[ASN][1000 genomes]
rs7898998	0.95[ASN][1000 genomes]
rs7909685	0.97[ASN][1000 genomes]
rs7910190	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427857	chr10:19253828-19599493	Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv550126	chr10:19270068-19572729	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv466764	chr10:19400845-19979434	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv550128	chr10:19400845-19979434	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv2750885	chr10:19407891-19836364	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv1043780	chr10:19415575-19827284	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1035870	chr10:19415575-19832047	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv550129	chr10:19417181-19834795	Flanking Active TSS Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1035591	chr10:19417883-19823164	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv540506	chr10:19417883-19823164	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	esv2750886	chr10:19432774-19832094	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv831802	chr10:19449261-19585888	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv428552	chr10:19457788-19623823	Genic enhancers Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv1047513	chr10:19461947-19810770	Enhancers Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
15	nsv540507	chr10:19461947-19810770	Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv947756	chr10:19500880-19512325	Weak transcription Strong transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
17	nsv947757	chr10:19500880-19533128	Strong transcription Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:19500400-19518600	Weak transcription	Fetal Intestine Large	intestine
2	chr10:19501400-19502800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:19501600-19502800	Weak transcription	Fetal Lung	lung
4	chr10:19502200-19502800	Strong transcription	Fetal Intestine Small	intestine

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