Variant report

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11140134	0.84[EUR][1000 genomes]
rs11140670	0.84[EUR][1000 genomes]
rs11141314	0.96[ASN][1000 genomes]
rs11141421	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11141422	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11141457	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11141466	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11141556	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11141888	0.84[ASN][1000 genomes]
rs11141997	0.94[CHB][hapmap];0.83[JPT][hapmap]
rs11142075	0.91[CHB][hapmap];0.81[JPT][hapmap]
rs12236622	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs265101	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs265104	0.82[AFR][1000 genomes]
rs450885	0.84[EUR][1000 genomes]
rs4744966	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs624149	0.95[CHB][hapmap];0.91[JPT][hapmap]
rs647899	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:70972200-71010600	Weak transcription	Aorta	Aorta
2	chr9:70978400-71009200	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:70982400-71015000	Weak transcription	Fetal Heart	heart
4	chr9:70982400-71031200	Weak transcription	Fetal Lung	lung
5	chr9:70987800-71031800	Weak transcription	Fetal Stomach	stomach
6	chr9:70990200-71011400	Weak transcription	Right Ventricle	heart
7	chr9:70992400-71012200	Weak transcription	NHLF	lung
8	chr9:70997800-71052600	Weak transcription	HSMMtube	muscle
9	chr9:70999000-71031800	Weak transcription	Colon Smooth Muscle	Colon
10	chr9:70999400-71019400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr9:71000200-71016200	Weak transcription	Ovary	ovary
12	chr9:71000600-71015000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:71000800-71009000	Weak transcription	Fetal Kidney	kidney
14	chr9:71003000-71011800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr9:71004000-71009000	Weak transcription	Adipose Nuclei	Adipose
16	chr9:71004600-71027200	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr9:71007000-71031000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr9:71007600-71019200	Weak transcription	Left Ventricle	heart
19	chr9:71007600-71022600	Weak transcription	Stomach Smooth Muscle	stomach
20	chr9:71007600-71032000	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search: