Variant report

Variant	rs2662621
Chromosome Location	chr5:57748101-57748102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:57157132..57161136-chr5:57747678..57750826,3	MCF-7	breast:
2	chr5:57608550..57610073-chr5:57747902..57750189,2	MCF-7	breast:
3	chr5:57375298..57377194-chr5:57746717..57748968,2	MCF-7	breast:
4	chr5:57480309..57485854-chr5:57746705..57749645,6	MCF-7	breast:
5	chr5:57708135..57711120-chr5:57747586..57749744,2	MCF-7	breast:
6	chr5:56594281..56596784-chr5:57747106..57749163,2	MCF-7	breast:
7	chr5:57541847..57544684-chr5:57747160..57748861,2	MCF-7	breast:
8	chr5:57555431..57557265-chr5:57747866..57749684,2	MCF-7	breast:
9	chr5:57534237..57536303-chr5:57746058..57748624,2	MCF-7	breast:
10	chr5:57401526..57403510-chr5:57748053..57750408,2	MCF-7	breast:
11	chr5:57178104..57180518-chr5:57747477..57749354,2	MCF-7	breast:
12	chr5:57623367..57625513-chr5:57747779..57749310,2	MCF-7	breast:
13	chr5:57370978..57374867-chr5:57746378..57750088,5	MCF-7	breast:
14	chr5:57666483..57668447-chr5:57747983..57749992,2	MCF-7	breast:
15	chr5:57554637..57557710-chr5:57746924..57749357,4	MCF-7	breast:
16	chr5:57714527..57717379-chr5:57746221..57748788,2	MCF-7	breast:

No data

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs149135	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs154678	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1848511	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2548596	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs702703	0.89[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs702704	0.88[ASN][1000 genomes]
rs702705	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702706	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs702711	0.90[EUR][1000 genomes]
rs702712	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs702714	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs702715	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs702716	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs702718	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs702722	0.93[EUR][1000 genomes]
rs702724	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs832623	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs832625	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs832627	0.91[EUR][1000 genomes]
rs832628	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs832630	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs832633	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs832634	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs832635	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs832637	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs832638	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs832640	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57735200-57751400	Weak transcription	Psoas Muscle	Psoas
2	chr5:57737800-57748600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr5:57737800-57749000	Weak transcription	Fetal Lung	lung
4	chr5:57741400-57750200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr5:57742800-57750000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:57742800-57750800	Weak transcription	Aorta	Aorta
7	chr5:57742800-57751400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:57743000-57748800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:57743000-57749400	Weak transcription	NHDF-Ad	bronchial
10	chr5:57743000-57750200	Weak transcription	Pancreas	Pancrea
11	chr5:57743200-57748400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:57743200-57750000	Weak transcription	NHLF	lung
13	chr5:57743800-57748400	Weak transcription	Fetal Kidney	kidney
14	chr5:57743800-57751000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr5:57744000-57750200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr5:57744400-57749200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr5:57745600-57748400	Weak transcription	Brain Germinal Matrix	brain
18	chr5:57746000-57748600	Genic enhancers	A549	lung
19	chr5:57746000-57751000	Strong transcription	Fetal Muscle Trunk	muscle
20	chr5:57746200-57749600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr5:57746200-57750200	Strong transcription	Fetal Muscle Leg	muscle
22	chr5:57746400-57748800	Enhancers	Placenta	Placenta
23	chr5:57746400-57749200	Weak transcription	Adipose Nuclei	Adipose
24	chr5:57746400-57749400	Weak transcription	HSMMtube	muscle
25	chr5:57746400-57750000	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr5:57746600-57748400	Weak transcription	NHEK	skin
27	chr5:57746600-57749200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr5:57746800-57748400	Weak transcription	Fetal Intestine Large	intestine
29	chr5:57746800-57749600	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr5:57746800-57750000	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr5:57746800-57750200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr5:57746800-57750400	Weak transcription	Fetal Thymus	thymus
33	chr5:57746800-57750800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr5:57747000-57748600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr5:57747000-57750400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr5:57747000-57752800	Weak transcription	Fetal Intestine Small	intestine
37	chr5:57747200-57748200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr5:57747200-57748800	Strong transcription	Fetal Stomach	stomach
39	chr5:57747200-57749200	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr5:57747200-57749400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr5:57747200-57750000	Weak transcription	Ovary	ovary
42	chr5:57747200-57750200	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr5:57747400-57748400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr5:57747400-57748600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr5:57747400-57749200	Strong transcription	Fetal Brain Female	brain
46	chr5:57747400-57750000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr5:57747400-57750000	Weak transcription	Rectal Mucosa Donor 29	rectum
48	chr5:57747400-57750200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr5:57747400-57750200	Weak transcription	Esophagus	oesophagus
50	chr5:57747400-57752400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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