Variant report

Variant	rs832623
Chromosome Location	chr5:57778708-57778709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs149135	0.80[AMR][1000 genomes]
rs154678	0.80[AMR][1000 genomes]
rs1848511	0.86[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes]
rs2548596	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs2662621	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs702703	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702704	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702705	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702706	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs702712	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs702714	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs702715	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs702716	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs702718	0.86[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs702722	0.86[CEU][hapmap]
rs702724	0.80[AMR][1000 genomes]
rs832625	0.80[AMR][1000 genomes]
rs832628	0.87[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs832630	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs832633	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs832634	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs832635	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs832637	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs832638	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs832640	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3405804	chr5:57774995-57779993	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
2	esv11510	chr5:57776769-57778784	Enhancers Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv820995	chr5:57776769-57778897	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv513241	chr5:57776969-57779389	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	n/a	n/a	inside rSNPs	diseases
5	esv3423189	chr5:57777045-57779543	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
6	esv2422993	chr5:57777076-57778801	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
7	nsv598246	chr5:57777623-57785273	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57773200-57785400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr5:57774200-57779000	Weak transcription	Primary B cells from cord blood	blood
3	chr5:57774200-57779400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:57774200-57780000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:57774400-57779000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr5:57778200-57782800	Enhancers	Primary B cells from peripheral blood	blood
7	chr5:57778400-57779400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
8	chr5:57778600-57778800	Weak transcription	Spleen	Spleen
9	chr5:57778600-57779400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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