Variant report

Variant	rs832625
Chromosome Location	chr5:57759821-57759822
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:56592286..56594694-chr5:57759435..57761857,2	MCF-7	breast:
2	chr5:57755924..57758334-chr5:57759314..57760918,2	MCF-7	breast:
3	chr22:22872350..22874493-chr5:57759289..57762269,2	K562	blood:

Variant related genes	Relation type
ENSG00000145632	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs149135	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs154678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1848511	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2548596	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2662621	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs702703	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs702704	0.87[ASN][1000 genomes]
rs702705	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs702706	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs702711	0.90[EUR][1000 genomes]
rs702712	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs702714	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs702715	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs702716	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs702718	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs702722	0.93[EUR][1000 genomes]
rs702724	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs832623	0.80[AMR][1000 genomes]
rs832627	0.91[EUR][1000 genomes]
rs832628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs832630	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs832633	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs832634	0.96[ASN][1000 genomes]
rs832635	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs832637	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs832638	0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs832640	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:57756800-57762800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr5:57756800-57762800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr5:57757000-57762600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:57757000-57763200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:57757000-57765600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr5:57758200-57760000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:57758400-57762600	Weak transcription	GM12878-XiMat	blood
8	chr5:57758600-57762600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr5:57758600-57762600	Weak transcription	Dnd41	blood
10	chr5:57758600-57762600	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr5:57758600-57762800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:57758600-57762800	Weak transcription	Brain Anterior Caudate	brain
13	chr5:57758600-57763000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr5:57758600-57763200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr5:57758600-57763200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr5:57758600-57763600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr5:57759000-57762600	Weak transcription	A549	lung

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